pyproject.toml

# see https://setuptools.pypa.io/en/latest/userguide/pyproject_config.html
[build-system]
requires = ["setuptools>=42", "wheel", "setuptools_scm>=6.4"]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]
write_to = "src/datasources/_version.py"

[project]
name = "datasources"
description = "Datasources workflow"
readme = "README.md"
keywords = ["bioinformatics"]
license = {text = "MIT"}
classifiers = [
    "Development Status :: 4 - Beta",
    "Environment :: Console",
    "Intended Audience :: Science/Research",
    "Natural Language :: English",
    "Programming Language :: Python :: 3",
    "Topic :: Scientific/Engineering :: Bio-Informatics"
]
dependencies = [
    'importlib-metadata; python_version>="3.7"',
    'jsonschema',
    'pypandoc',
]
dynamic = ["version"]

[tool.setuptools.dynamic]
version = {attr = "datasources.__version__"}

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools]
package-data = { datasources = [
	     "workflow/Snakefile",
	     "workflow/envs/*",
	     "workflow/rules/*.smk",
	     "workflow/schemas/*",
	     "config/*",
	     ".test/*"
]}

[project.scripts]
datasources = "datasources.__main__:main"

[tool.pytest.ini_options]
minversion = "7.0"
addopts = "-ra -q --doctest-modules"
pythonpath = [
    "src"
]
testpaths = [
    "tests",
]
filterwarnings = [
    "ignore::DeprecationWarning",
]


[tool.tox]
legacy_tox_ini = """
[tox]
envlist = py39
isolated_build = true

[testenv]
changedir = tests
deps =
    pytest
    pytest-cov
    pip>=7.0.0
    snakemake
    wheel
commands =
    pytest --basetemp="{envtmpdir}" {posargs}
"""