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The Opteron 6100 series are physically two multi-core CPUs on the same socket and the "core id:" field in cpuinfo is reused between CPUs, resulting in VanillaCpuLayout.fromCpuInfo() incorrectly counting them as multiple thread units for the same core.
It's certainly not sufficient for your purpose, anyway. I've had better luck using hwloc/lstopo from OpenMPI to get physical layout information, maybe you could leverage that somehow instead?
The Opteron 6100 series are physically two multi-core CPUs on the same socket and the "core id:" field in cpuinfo is reused between CPUs, resulting in VanillaCpuLayout.fromCpuInfo() incorrectly counting them as multiple thread units for the same core.
Contents of /proc/cpuinfo: https://gist.github.com/2209193
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