The knitr::kable() Static Solution
@@ -545,11 +545,11 @@ The knitr::kable() Static S
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@@ -1118,15 +1119,15 @@
@@ -1136,15 +1137,15 @@ The {gt} Static SolutionOCCDS
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- Analysis end time
+ Derive treatment end date
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+NA |
@@ -1154,15 +1155,15 @@ The {gt} Static SolutionOCCDS
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- Analysis start time
+ Derive death date
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@@ -1172,15 +1173,15 @@ The {gt} Static SolutionOCCDS
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- Occurrence flags: first occurrence of most severe AE
+ Derive end of study date
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+NA |
@@ -1190,15 +1191,15 @@ The {gt} Static SolutionOCCDS
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- Last dose date/time
+ Derive analysis duration
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-NA |
+NA |
@@ -1208,87 +1209,87 @@ The {gt} Static SolutionOCCDS
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- Treatment emergent flag
+ Derive analysis start datetime
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+NA |
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- 1st Occurrence of Preferred Term Flag
+ Derive analysis end datetime
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-NA |
+NA |
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- Analysis end time
+ Derive analysis start date variables from datetimes
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-NA |
+NA |
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- Analysis start time
+ Derive analysis end date variables from datetimes
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-NA |
+NA |
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- On-Treatment flag
+ Derive occurrence flags: first occurrence of most severe adverse events
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-NA |
+NA |
diff --git a/pkgdown.yml b/pkgdown.yml
index 38fabea..ebef954 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 2.0.7
pkgdown_sha: ~
articles:
discovery: discovery.html
-last_built: 2023-08-31T22:46Z
+last_built: 2023-09-08T01:04Z
urls:
reference: https://pharmaverse.github.io/admiraldiscovery/reference
article: https://pharmaverse.github.io/admiraldiscovery/articles
diff --git a/search.json b/search.json
index 177115c..c12b702 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":"https://pharmaverse.github.io/admiraldiscovery/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2023 admiraldiscovery authors Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-gt-interactive-solution","dir":"Articles","previous_headings":"","what":"The {gt} Interactive Solution","title":"discovery","text":"linking hard-coded table.","code":"admiraldiscovery::interactive_discovery(\"gt\")"},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-reactable-interactive-solution","dir":"Articles","previous_headings":"","what":"The {reactable} Interactive Solution","title":"discovery","text":"linking hard-coded table.","code":"admiraldiscovery::interactive_discovery(\"reactable\")"},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-knitrkable-static-solution","dir":"Articles","previous_headings":"","what":"The knitr::kable() Static Solution","title":"discovery","text":"Auto-linking works .","code":"admiraldiscovery::discovery |> head(n = 10) |> dplyr::mutate( fn_linked = glue::glue(\"`{package}::{fn}()`\"), .before = package ) |> dplyr::select(-c(\"package\", \"fn\", \"fn_url\")) |> knitr::kable()"},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-gt-static-solution","dir":"Articles","previous_headings":"","what":"The {gt} Static Solution","title":"discovery","text":"Auto-linking works . ADAE OCCDS ADURN Duration two dates admiral::derive_vars_duration() ADAE OCCDS AEENDTC Analysis end time admiral::derive_vars_dtm() ADAE OCCDS AESTDTC Analysis start time admiral::derive_vars_dtm() ADAE OCCDS AOCCIFL Occurrence flags: first occurrence severe AE admiral::restrict_derivation() ADAE OCCDS LDOSEDTM Last dose date/time admiral::derive_vars_joined() ADAE OCCDS TRTEMFL Treatment emergent flag admiral::derive_var_trtemfl() ADCM OCCDS AOCCIFL 1st Occurrence Preferred Term Flag admiral::restrict_derivation() ADCM OCCDS CMENDTC Analysis end time admiral::derive_vars_dtm() ADCM OCCDS CMSTDTC Analysis start time admiral::derive_vars_dtm() ADCM OCCDS ONTRTFL -Treatment flag admiral::derive_var_ontrtfl()","code":"library(gt) admiraldiscovery::discovery |> head(n = 10) |> dplyr::mutate( fn_linked = glue::glue(\"`{package}::{fn}()`\"), .before = package ) |> dplyr::select(-c(\"package\", \"fn\", \"fn_url\")) |> gt::gt() |> fmt_markdown()"},{"path":"https://pharmaverse.github.io/admiraldiscovery/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Daniel D. Sjoberg. Author, maintainer.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Sjoberg D (2023). admiraldiscovery: Package (One Line, Title Case). R package version 0.0.0.9000, https://pharmaverse.github.io/admiraldiscovery/.","code":"@Manual{, title = {admiraldiscovery: What the Package Does (One Line, Title Case)}, author = {Daniel D. Sjoberg}, year = {2023}, note = {R package version 0.0.0.9000}, url = {https://pharmaverse.github.io/admiraldiscovery/}, }"},{"path":"https://pharmaverse.github.io/admiraldiscovery/index.html","id":"admiral-discovery","dir":"","previous_headings":"","what":"{admiral} Discovery","title":"What the Package Does (One Line, Title Case)","text":"CONSTRUCTION repository reference users admiral family packages discover functions can used derive various ADaM data sets variables.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/admiraldiscovery-package.html","id":null,"dir":"Reference","previous_headings":"","what":"admiraldiscovery: What the Package Does (One Line, Title Case) — admiraldiscovery-package","title":"admiraldiscovery: What the Package Does (One Line, Title Case) — admiraldiscovery-package","text":"package (one paragraph).","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/admiraldiscovery-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"admiraldiscovery: What the Package Does (One Line, Title Case) — admiraldiscovery-package","text":"Maintainer: Daniel D. Sjoberg danield.sjoberg@gmail.com (ORCID)","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/discovery.html","id":null,"dir":"Reference","previous_headings":"","what":"Admiral Function Discovery — discovery","title":"Admiral Function Discovery — discovery","text":"data set lists admiral functions links ADaM data sets variables help create.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/discovery.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Admiral Function Discovery — discovery","text":"","code":"discovery"},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/discovery.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Admiral Function Discovery — discovery","text":"object class spec_tbl_df (inherits tbl_df, tbl, data.frame) 91 rows 8 columns.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":null,"dir":"Reference","previous_headings":"","what":"Interactive Admiral Function Discovery — interactive_discovery","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"Interactively explore admiral functions ADaM data sets variables help create.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"","code":"interactive_discovery(type = c(\"gt\", \"reactable\"))"},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"type type table return","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"interactive gt table","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"","code":"if (FALSE) { # interactive() interactive_discovery(\"gt\") interactive_discovery(\"reactable\") }"}]
+[{"path":"https://pharmaverse.github.io/admiraldiscovery/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2023 admiraldiscovery authors Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-gt-interactive-solution","dir":"Articles","previous_headings":"","what":"The {gt} Interactive Solution","title":"discovery","text":"linking hard-coded table.","code":"admiraldiscovery::interactive_discovery(\"gt\")"},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-reactable-interactive-solution","dir":"Articles","previous_headings":"","what":"The {reactable} Interactive Solution","title":"discovery","text":"linking hard-coded table.","code":"admiraldiscovery::interactive_discovery(\"reactable\")"},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-knitrkable-static-solution","dir":"Articles","previous_headings":"","what":"The knitr::kable() Static Solution","title":"discovery","text":"Auto-linking works .","code":"admiraldiscovery::discovery |> head(n = 10) |> dplyr::mutate( fn_linked = glue::glue(\"`{package}::{fn}()`\"), .before = package ) |> dplyr::select(-c(\"package\", \"fn\", \"fn_url\")) |> knitr::kable()"},{"path":"https://pharmaverse.github.io/admiraldiscovery/articles/discovery.html","id":"the-gt-static-solution","dir":"Articles","previous_headings":"","what":"The {gt} Static Solution","title":"discovery","text":"Auto-linking works . ADAE OCCDS TRTSDT Derive treatment start date admiral::derive_vars_merged() ADAE OCCDS TRTEDT Derive treatment end date admiral::derive_vars_merged() ADAE OCCDS DTHDT Derive death date admiral::derive_vars_merged() ADAE OCCDS EOSDT Derive end study date admiral::derive_vars_merged() ADAE OCCDS ADURN Derive analysis duration admiral::derive_vars_duration() ADAE OCCDS ASTDTM Derive analysis start datetime admiral::derive_vars_dtm() ADAE OCCDS AENDTM Derive analysis end datetime admiral::derive_vars_dtm() ADAE OCCDS ASTDT Derive analysis start date variables datetimes admiral::derive_vars_dtm_to_dt() ADAE OCCDS AENDT Derive analysis end date variables datetimes admiral::derive_vars_dtm_to_dt() ADAE OCCDS AOCCIFL Derive occurrence flags: first occurrence severe adverse events admiral::restrict_derivation()","code":"library(gt) admiraldiscovery::discovery |> head(n = 10) |> dplyr::mutate( fn_linked = glue::glue(\"`{package}::{fn}()`\"), .before = package ) |> dplyr::select(-c(\"package\", \"fn\", \"fn_url\")) |> gt::gt() |> fmt_markdown()"},{"path":"https://pharmaverse.github.io/admiraldiscovery/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Daniel D. Sjoberg. Author, maintainer.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Sjoberg D (2023). admiraldiscovery: Package (One Line, Title Case). R package version 0.0.0.9000, https://pharmaverse.github.io/admiraldiscovery/.","code":"@Manual{, title = {admiraldiscovery: What the Package Does (One Line, Title Case)}, author = {Daniel D. Sjoberg}, year = {2023}, note = {R package version 0.0.0.9000}, url = {https://pharmaverse.github.io/admiraldiscovery/}, }"},{"path":"https://pharmaverse.github.io/admiraldiscovery/index.html","id":"admiral-discovery","dir":"","previous_headings":"","what":"{admiral} Discovery","title":"What the Package Does (One Line, Title Case)","text":"CONSTRUCTION repository reference users admiral family packages discover functions can used derive various ADaM data sets variables.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/admiraldiscovery-package.html","id":null,"dir":"Reference","previous_headings":"","what":"admiraldiscovery: What the Package Does (One Line, Title Case) — admiraldiscovery-package","title":"admiraldiscovery: What the Package Does (One Line, Title Case) — admiraldiscovery-package","text":"package (one paragraph).","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/admiraldiscovery-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"admiraldiscovery: What the Package Does (One Line, Title Case) — admiraldiscovery-package","text":"Maintainer: Daniel D. Sjoberg danield.sjoberg@gmail.com (ORCID)","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/discovery.html","id":null,"dir":"Reference","previous_headings":"","what":"Admiral Function Discovery — discovery","title":"Admiral Function Discovery — discovery","text":"data set lists admiral functions links ADaM data sets variables help create.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/discovery.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Admiral Function Discovery — discovery","text":"","code":"discovery"},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/discovery.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Admiral Function Discovery — discovery","text":"object class spec_tbl_df (inherits tbl_df, tbl, data.frame) 91 rows 8 columns.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":null,"dir":"Reference","previous_headings":"","what":"Interactive Admiral Function Discovery — interactive_discovery","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"Interactively explore admiral functions ADaM data sets variables help create.","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"","code":"interactive_discovery(type = c(\"gt\", \"reactable\"))"},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"type type table return","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"interactive gt table","code":""},{"path":"https://pharmaverse.github.io/admiraldiscovery/reference/interactive_discovery.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Interactive Admiral Function Discovery — interactive_discovery","text":"","code":"if (FALSE) { # interactive() interactive_discovery(\"gt\") interactive_discovery(\"reactable\") }"}]