-
+
+
-
-
-
-
-
-
-
+
+
+
+
+
+
+
-
-
-
+
+
+
The resulting output is shown below (limited to the first patient
only):
-
-
+
+
Deriving Criterion Flags for BCVA Change
@@ -478,8 +444,8 @@ Deriving Criterion Flags for BCVA Change)
The resulting output is shown below (limited to the first patient
only):
-
-
It is also possible to assign significance to the “x” in
+
+
It is also possible to assign significance to the “x” in
CRITxFL. For instance, one could designate all criterion
flags of Class 1 as CRIT1yFL, Class 2 as
CRIT2yFL, and Class 3 as CRIT3yFL. The
@@ -558,28 +524,26 @@
-
-
+
+
diff --git a/dev/articles/adbcva_files/crosstalk-1.2.0/css/crosstalk.min.css b/dev/articles/adbcva_files/crosstalk-1.2.1/css/crosstalk.min.css
similarity index 100%
rename from dev/articles/adbcva_files/crosstalk-1.2.0/css/crosstalk.min.css
rename to dev/articles/adbcva_files/crosstalk-1.2.1/css/crosstalk.min.css
diff --git a/dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.js b/dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.js
similarity index 100%
rename from dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.js
rename to dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.js
diff --git a/dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.js.map b/dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.js.map
similarity index 100%
rename from dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.js.map
rename to dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.js.map
diff --git a/dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.min.js b/dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.min.js
similarity index 100%
rename from dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.min.js
rename to dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.min.js
diff --git a/dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.min.js.map b/dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.min.js.map
similarity index 100%
rename from dev/articles/adbcva_files/crosstalk-1.2.0/js/crosstalk.min.js.map
rename to dev/articles/adbcva_files/crosstalk-1.2.1/js/crosstalk.min.js.map
diff --git a/dev/articles/adbcva_files/crosstalk-1.2.0/scss/crosstalk.scss b/dev/articles/adbcva_files/crosstalk-1.2.1/scss/crosstalk.scss
similarity index 100%
rename from dev/articles/adbcva_files/crosstalk-1.2.0/scss/crosstalk.scss
rename to dev/articles/adbcva_files/crosstalk-1.2.1/scss/crosstalk.scss
diff --git a/dev/articles/adbcva_files/datatables-binding-0.27/datatables.js b/dev/articles/adbcva_files/datatables-binding-0.33/datatables.js
similarity index 95%
rename from dev/articles/adbcva_files/datatables-binding-0.27/datatables.js
rename to dev/articles/adbcva_files/datatables-binding-0.33/datatables.js
index 55d81876..765b53cb 100644
--- a/dev/articles/adbcva_files/datatables-binding-0.27/datatables.js
+++ b/dev/articles/adbcva_files/datatables-binding-0.33/datatables.js
@@ -2,7 +2,7 @@
// some helper functions: using a global object DTWidget so that it can be used
// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's
-// dynamic scoping, when 'code' is eval()'ed, JavaScript does not know objects
+// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects
// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made
// a global object
var DTWidget = {};
@@ -348,6 +348,15 @@ HTMLWidgets.widget({
var table = $table.DataTable(options);
$el.data('datatable', table);
+ if ('rowGroup' in options) {
+ // Maintain RowGroup dataSrc when columns are reordered (#1109)
+ table.on('column-reorder', function(e, settings, details) {
+ var oldDataSrc = table.rowGroup().dataSrc();
+ var newDataSrc = details.mapping[oldDataSrc];
+ table.rowGroup().dataSrc(newDataSrc);
+ });
+ }
+
// Unregister previous Crosstalk event subscriptions, if they exist
if (instance.ctfilterSubscription) {
instance.ctfilterHandle.off("change", instance.ctfilterSubscription);
@@ -432,10 +441,13 @@ HTMLWidgets.widget({
regex = options.search.regex,
ci = options.search.caseInsensitive !== false;
}
+ // need to transpose the column index when colReorder is enabled
+ if (table.colReorder) i = table.colReorder.transpose(i);
return table.column(i).search(value, regex, !regex, ci);
};
if (data.filter !== 'none') {
+ if (!data.hasOwnProperty('filterSettings')) data.filterSettings = {};
filterRow.each(function(i, td) {
@@ -493,11 +505,13 @@ HTMLWidgets.widget({
$input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus();
},
input: function() {
- if ($input.val() === '') filter[0].selectize.setValue([]);
+ var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val();
+ if (v1 === '[]') v1 = '';
+ if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2));
}
});
var $input2 = $x.children('select');
- filter = $input2.selectize({
+ filter = $input2.selectize($.extend({
options: $input2.data('options').map(function(v, i) {
return ({text: v, value: v});
}),
@@ -509,15 +523,14 @@ HTMLWidgets.widget({
if (value.length) $input.trigger('input');
$input.attr('title', $input.val());
if (server) {
- table.column(i).search(value.length ? JSON.stringify(value) : '').draw();
+ searchColumn(i, value.length ? JSON.stringify(value) : '').draw();
return;
}
// turn off filter if nothing selected
$td.data('filter', value.length > 0);
table.draw(); // redraw table, and filters will be applied
}
- });
- if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol));
+ }, data.filterSettings.select));
filter[0].selectize.on('blur', function() {
$x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur');
});
@@ -526,10 +539,12 @@ HTMLWidgets.widget({
var fun = function() {
searchColumn(i, $input.val()).draw();
};
- if (server) {
- fun = $.fn.dataTable.util.throttle(fun, options.searchDelay);
- }
- $input.on('input', fun);
+ // throttle searching for server-side processing
+ var throttledFun = $.fn.dataTable.util.throttle(fun, options.searchDelay);
+ $input.on('input', function(e, immediate) {
+ // always bypass throttling when immediate = true (via the updateSearch method)
+ (immediate || !server) ? fun() : throttledFun();
+ });
} else if (inArray(type, ['number', 'integer', 'date', 'time'])) {
var $x0 = $x;
$x = $x0.children('div').first();
@@ -615,13 +630,11 @@ HTMLWidgets.widget({
filter.val(v);
}
});
- var formatDate = function(d, isoFmt) {
+ var formatDate = function(d) {
d = scaleBack(d, scale);
if (type === 'number') return d;
if (type === 'integer') return parseInt(d);
var x = new Date(+d);
- var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined;
- if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params);
if (type === 'date') {
var pad0 = function(x) {
return ('0' + x).substr(-2, 2);
@@ -642,7 +655,7 @@ HTMLWidgets.widget({
start: [r1, r2],
range: {min: r1, max: r2},
connect: true
- }, opts));
+ }, opts, data.filterSettings.slider));
if (scale > 1) (function() {
var t1 = r1, t2 = r2;
var val = filter.val();
@@ -657,13 +670,28 @@ HTMLWidgets.widget({
start: [t1, t2],
range: {min: t1, max: t2},
connect: true
- }, opts), true);
+ }, opts, data.filterSettings.slider), true);
val = filter.val();
}
r1 = t1; r2 = t2;
})();
+ // format with active column renderer, if defined
+ var colDef = data.options.columnDefs.find(function(def) {
+ return (def.targets === i || inArray(i, def.targets)) && 'render' in def;
+ });
var updateSliderText = function(v1, v2) {
- $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false));
+ // we only know how to use function renderers
+ if (colDef && typeof colDef.render === 'function') {
+ var restore = function(v) {
+ v = scaleBack(v, scale);
+ return inArray(type, ['date', 'time']) ? new Date(+v) : v;
+ }
+ $span1.text(colDef.render(restore(v1), 'display'));
+ $span2.text(colDef.render(restore(v2), 'display'));
+ } else {
+ $span1.text(formatDate(v1));
+ $span2.text(formatDate(v2));
+ }
};
updateSliderText(r1, r2);
var updateSlider = function(e) {
@@ -680,7 +708,7 @@ HTMLWidgets.widget({
updateSliderText(val[0], val[1]);
if (e.type === 'slide') return; // no searching when sliding only
if (server) {
- table.column(i).search($td.data('filter') ? ival : '').draw();
+ searchColumn(i, $td.data('filter') ? ival : '').draw();
return;
}
table.draw();
@@ -696,7 +724,7 @@ HTMLWidgets.widget({
// processing
if (server) {
// if a search string has been pre-set, search now
- if (searchCol) searchColumn(i, searchCol).draw();
+ if (searchCol) $input.trigger('input').trigger('change');
return;
}
@@ -742,15 +770,7 @@ HTMLWidgets.widget({
$.fn.dataTable.ext.search.push(customFilter);
// search for the preset search strings if it is non-empty
- if (searchCol) {
- if (inArray(type, ['factor', 'logical'])) {
- filter[0].selectize.setValue(JSON.parse(searchCol));
- } else if (type === 'character') {
- $input.trigger('input');
- } else if (inArray(type, ['number', 'integer', 'date', 'time'])) {
- $input.trigger('change');
- }
- }
+ if (searchCol) $input.trigger('input').trigger('change');
});
@@ -823,6 +843,7 @@ HTMLWidgets.widget({
var disableCols = data.editable.disable ? data.editable.disable.columns : null;
var numericCols = data.editable.numeric;
var areaCols = data.editable.area;
+ var dateCols = data.editable.date;
for (var i = 0; i < target.length; i++) {
(function(cell, current) {
var $cell = $(cell), html = $cell.html();
@@ -832,6 +853,8 @@ HTMLWidgets.widget({
$input = $('
');
} else if (inArray(index, areaCols)) {
$input = $('
');
+ } else if (inArray(index, dateCols)) {
+ $input = $('
');
} else {
$input = $('
');
}
@@ -1009,6 +1032,9 @@ HTMLWidgets.widget({
updateColsSelected();
updateCellsSelected();
})
+ updateRowsSelected();
+ updateColsSelected();
+ updateCellsSelected();
}
var selMode = data.selection.mode, selTarget = data.selection.target;
@@ -1367,7 +1393,7 @@ HTMLWidgets.widget({
changeInput('cell_clicked', {});
// do not trigger table selection when clicking on links unless they have classes
- table.on('click.dt', 'tbody td a', function(e) {
+ table.on('mousedown.dt', 'tbody td a', function(e) {
if (this.className === '') e.stopPropagation();
});
@@ -1395,8 +1421,9 @@ HTMLWidgets.widget({
console.log('The search keyword for column ' + i + ' is undefined')
return;
}
- $(td).find('input').first().val(v);
- searchColumn(i, v);
+ // Update column search string and values on linked filter widgets.
+ // 'input' for factor and char filters, 'change' for numeric filters.
+ $(td).find('input').first().val(v).trigger('input', [true]).trigger('change');
});
table.draw();
}
diff --git a/dev/articles/adbcva_files/dt-core-1.12.1/css/jquery.dataTables.min.css b/dev/articles/adbcva_files/dt-core-1.12.1/css/jquery.dataTables.min.css
deleted file mode 100644
index 173ae3c4..00000000
--- a/dev/articles/adbcva_files/dt-core-1.12.1/css/jquery.dataTables.min.css
+++ /dev/null
@@ -1 +0,0 @@
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thead>tr>th.sorting:before,table.dataTable thead>tr>th.sorting:after,table.dataTable thead>tr>th.sorting_asc:before,table.dataTable thead>tr>th.sorting_asc:after,table.dataTable thead>tr>th.sorting_desc:before,table.dataTable thead>tr>th.sorting_desc:after,table.dataTable thead>tr>th.sorting_asc_disabled:before,table.dataTable thead>tr>th.sorting_asc_disabled:after,table.dataTable thead>tr>th.sorting_desc_disabled:before,table.dataTable thead>tr>th.sorting_desc_disabled:after,table.dataTable thead>tr>td.sorting:before,table.dataTable thead>tr>td.sorting:after,table.dataTable thead>tr>td.sorting_asc:before,table.dataTable thead>tr>td.sorting_asc:after,table.dataTable thead>tr>td.sorting_desc:before,table.dataTable thead>tr>td.sorting_desc:after,table.dataTable thead>tr>td.sorting_asc_disabled:before,table.dataTable thead>tr>td.sorting_asc_disabled:after,table.dataTable thead>tr>td.sorting_desc_disabled:before,table.dataTable thead>tr>td.sorting_desc_disabled:after{position:absolute;display:block;opacity:.125;right:10px;line-height:9px;font-size:.9em}table.dataTable thead>tr>th.sorting:before,table.dataTable thead>tr>th.sorting_asc:before,table.dataTable thead>tr>th.sorting_desc:before,table.dataTable thead>tr>th.sorting_asc_disabled:before,table.dataTable thead>tr>th.sorting_desc_disabled:before,table.dataTable thead>tr>td.sorting:before,table.dataTable thead>tr>td.sorting_asc:before,table.dataTable thead>tr>td.sorting_desc:before,table.dataTable thead>tr>td.sorting_asc_disabled:before,table.dataTable thead>tr>td.sorting_desc_disabled:before{bottom:50%;content:"▴"}table.dataTable thead>tr>th.sorting:after,table.dataTable thead>tr>th.sorting_asc:after,table.dataTable thead>tr>th.sorting_desc:after,table.dataTable thead>tr>th.sorting_asc_disabled:after,table.dataTable thead>tr>th.sorting_desc_disabled:after,table.dataTable thead>tr>td.sorting:after,table.dataTable 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thead>tr>td:after{display:none}div.dataTables_processing{position:absolute;top:50%;left:50%;width:200px;margin-left:-100px;margin-top:-26px;text-align:center;padding:2px}div.dataTables_processing>div:last-child{position:relative;width:80px;height:15px;margin:1em auto}div.dataTables_processing>div:last-child>div{position:absolute;top:0;width:13px;height:13px;border-radius:50%;background:rgba(13, 110, 253, 0.9);animation-timing-function:cubic-bezier(0, 1, 1, 0)}div.dataTables_processing>div:last-child>div:nth-child(1){left:8px;animation:datatables-loader-1 .6s infinite}div.dataTables_processing>div:last-child>div:nth-child(2){left:8px;animation:datatables-loader-2 .6s infinite}div.dataTables_processing>div:last-child>div:nth-child(3){left:32px;animation:datatables-loader-2 .6s infinite}div.dataTables_processing>div:last-child>div:nth-child(4){left:56px;animation:datatables-loader-3 .6s infinite}@keyframes datatables-loader-1{0%{transform:scale(0)}100%{transform:scale(1)}}@keyframes 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td.dt-head-center,table.dataTable tfoot th.dt-head-center,table.dataTable tfoot td.dt-head-center{text-align:center}table.dataTable thead th.dt-head-right,table.dataTable thead td.dt-head-right,table.dataTable tfoot th.dt-head-right,table.dataTable tfoot td.dt-head-right{text-align:right}table.dataTable thead th.dt-head-justify,table.dataTable thead td.dt-head-justify,table.dataTable tfoot th.dt-head-justify,table.dataTable tfoot td.dt-head-justify{text-align:justify}table.dataTable thead th.dt-head-nowrap,table.dataTable thead td.dt-head-nowrap,table.dataTable tfoot th.dt-head-nowrap,table.dataTable tfoot td.dt-head-nowrap{white-space:nowrap}table.dataTable tbody th.dt-body-left,table.dataTable tbody td.dt-body-left{text-align:left}table.dataTable tbody th.dt-body-center,table.dataTable tbody td.dt-body-center{text-align:center}table.dataTable tbody th.dt-body-right,table.dataTable tbody td.dt-body-right{text-align:right}table.dataTable tbody th.dt-body-justify,table.dataTable tbody td.dt-body-justify{text-align:justify}table.dataTable tbody th.dt-body-nowrap,table.dataTable tbody td.dt-body-nowrap{white-space:nowrap}table.dataTable{width:100%;margin:0 auto;clear:both;border-collapse:separate;border-spacing:0}table.dataTable thead th,table.dataTable tfoot th{font-weight:bold}table.dataTable thead th,table.dataTable thead td{padding:10px;border-bottom:1px solid rgba(0, 0, 0, 0.3)}table.dataTable thead th:active,table.dataTable thead td:active{outline:none}table.dataTable tfoot th,table.dataTable tfoot td{padding:10px 10px 6px 10px;border-top:1px solid rgba(0, 0, 0, 0.3)}table.dataTable tbody tr{background-color:transparent}table.dataTable tbody tr.selected>*{box-shadow:inset 0 0 0 9999px rgba(13, 110, 253, 0.9);color:white}table.dataTable tbody th,table.dataTable tbody td{padding:8px 10px}table.dataTable.row-border tbody th,table.dataTable.row-border tbody td,table.dataTable.display tbody th,table.dataTable.display tbody td{border-top:1px solid rgba(0, 0, 0, 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deleted file mode 100644
index 4c73e87d..00000000
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