From 9d805aca22f195765787b4bdf5c399d1abcb96b0 Mon Sep 17 00:00:00 2001 From: vedhav Date: Mon, 5 Aug 2024 15:52:35 +0530 Subject: [PATCH 1/3] chore: fix broken link --- .lycheeignore | 5 ++--- .../containers_and_webassembly_submissions.qmd | 2 +- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/.lycheeignore b/.lycheeignore index c637c5a3..79129898 100644 --- a/.lycheeignore +++ b/.lycheeignore @@ -1,7 +1,7 @@ ///home/runner/work/comms_wg/comms_wg/posts/2023-01-09_welcome/pharmaverse.slack.com ///home/runner/work/blog/blog/pharmaverse.slack.com ///home/runner/work/blog/blog/posts/2023-01-09_welcome/pharmaverse.slack.com -https://www.linkedin.com/* +https://www.linkedin.com/_ https://cosa.cdisc.org/events/Admiral ///home/runner/work/blog/blog/posts/2023-06-28_welcome/pharmaverse.slack.com https://pharmaverse.github.io/blog/posts/2023-06-27_hackathon_app/ @@ -11,11 +11,10 @@ https://doi.org/10.1177/17407745221123244 https://appsilon.com/static/35215a117d1bc17fac2179f059c3709f/rhino_fda_pilot_r_shiny_app_e-ctd.webm http://localhost:8787/ https://github.com/pharmaverse/blog/pkgs/container/blog -https://stackoverflow.com/* +https://stackoverflow.com/_ https://stackoverflow.com/questions/12688717/round-up-from-5#comment110611119_12688836 https://appsilon.com/docker-vs-podman-vs-singularity/amp/ file:///home/runner/work/blog/blog/posts/2024-03-01_rhino_shiny_app_validation/Appsilon.com https://rsc.niaid.nih.gov/clinical-research-sites/daids-adverse-event-grading-tables https://gowerc.github.io/diffdf/reference/diffdf.html](https://gowerc.github.io/diffdf/reference/diffdf.html) https://gowerc.github.io/diffdf/reference/diffdf.html -https://rsubmission-draft.website-us-east-1.linodeobjects.com/ diff --git a/posts/2024-02-01_containers_webassembly_submission/containers_and_webassembly_submissions.qmd b/posts/2024-02-01_containers_webassembly_submission/containers_and_webassembly_submissions.qmd index 93eb30c7..d67688b9 100644 --- a/posts/2024-02-01_containers_webassembly_submission/containers_and_webassembly_submissions.qmd +++ b/posts/2024-02-01_containers_webassembly_submission/containers_and_webassembly_submissions.qmd @@ -40,7 +40,7 @@ The final response letter from the FDA was reviewed on September 27, 2023. ![](images/teal.png){fig-align="center" width="159"} -In this submission, there were many open-source R packages that were used to create and execute the Shiny application. A very well-known shiny-based interactive exploration framework **{teal}** was used mainly for analyzing the clinical trial data; this package is included in the pharmaverse package repository. The full list of open-source and proprietary R analysis packages is available on this [Analysis Data Reviewer's Guide](https://rsubmission-draft.website-us-east-1.linodeobjects.com/) prepared by the R Consortium R Submissions Working Group for the Pilot 2. +In this submission, there were many open-source R packages that were used to create and execute the Shiny application. A very well-known shiny-based interactive exploration framework **{teal}** was used mainly for analyzing the clinical trial data; this package is included in the pharmaverse package repository. The full list of open-source and proprietary R analysis packages is available on this [Analysis Data Reviewer's Guide](https://github.com/RConsortium/submissions-pilot2-to-fda/blob/main/m5/datasets/rconsortiumpilot2/analysis/adam/datasets/adrg.pdf) prepared by the R Consortium R Submissions Working Group for the Pilot 2. # What's next? From c64f40ef55bfd1cadd9495e52a51202a6aa7d5c9 Mon Sep 17 00:00:00 2001 From: vedhav Date: Mon, 5 Aug 2024 15:58:30 +0530 Subject: [PATCH 2/3] chore: revert unwanted change --- .lycheeignore | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.lycheeignore b/.lycheeignore index 79129898..c61fd943 100644 --- a/.lycheeignore +++ b/.lycheeignore @@ -1,7 +1,7 @@ ///home/runner/work/comms_wg/comms_wg/posts/2023-01-09_welcome/pharmaverse.slack.com ///home/runner/work/blog/blog/pharmaverse.slack.com ///home/runner/work/blog/blog/posts/2023-01-09_welcome/pharmaverse.slack.com -https://www.linkedin.com/_ +https://www.linkedin.com/* https://cosa.cdisc.org/events/Admiral ///home/runner/work/blog/blog/posts/2023-06-28_welcome/pharmaverse.slack.com https://pharmaverse.github.io/blog/posts/2023-06-27_hackathon_app/ @@ -11,7 +11,7 @@ https://doi.org/10.1177/17407745221123244 https://appsilon.com/static/35215a117d1bc17fac2179f059c3709f/rhino_fda_pilot_r_shiny_app_e-ctd.webm http://localhost:8787/ https://github.com/pharmaverse/blog/pkgs/container/blog -https://stackoverflow.com/_ +https://stackoverflow.com/* https://stackoverflow.com/questions/12688717/round-up-from-5#comment110611119_12688836 https://appsilon.com/docker-vs-podman-vs-singularity/amp/ file:///home/runner/work/blog/blog/posts/2024-03-01_rhino_shiny_app_validation/Appsilon.com From 07ecd31918ff4ad71281ce5932d9d6e625a3e441 Mon Sep 17 00:00:00 2001 From: vedhav Date: Mon, 5 Aug 2024 16:01:20 +0530 Subject: [PATCH 3/3] fix: ignore words to pass spellcheck --- inst/WORDLIST.txt | 2 ++ 1 file changed, 2 insertions(+) diff --git a/inst/WORDLIST.txt b/inst/WORDLIST.txt index 75a4f0ac..fb9b3447 100644 --- a/inst/WORDLIST.txt +++ b/inst/WORDLIST.txt @@ -24,6 +24,7 @@ admiralvaccine adnca ADPCYMG ADPPK +adrg ADRG adsl ADSL @@ -438,6 +439,7 @@ RACEN Rbasel rconsortium RConsortium +rconsortiumpilot rconsortiumxappsilon rds reactable