From de185409e1c2626ba2871c143736cf052befcbc4 Mon Sep 17 00:00:00 2001
From: Philipp Basler <28863303+phbasler@users.noreply.github.com>
Date: Tue, 7 May 2024 00:13:29 +0200
Subject: [PATCH] Fix doxygen start page (#141)

* Fix doxygen start page

* add build missing for codecov

* Add --build-missing to codeql

---------

Co-authored-by: Philipp Basler <philipp.basler@kit.edu>
---
 .codecov.yaml                 | 2 ++
 .github/workflows/codecov.yml | 2 +-
 .github/workflows/codeql.yml  | 2 +-
 CMakeLists.txt                | 3 ++-
 4 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/.codecov.yaml b/.codecov.yaml
index d2882791..ab6968bd 100644
--- a/.codecov.yaml
+++ b/.codecov.yaml
@@ -16,3 +16,5 @@ ignore:
   - "src/utility/spline/spline.cpp"
   - "src/utility/asciiplotter/asciiplotter.cpp"
   - "example/**"
+  - ".github"
+  - "**/README.md"
diff --git a/.github/workflows/codecov.yml b/.github/workflows/codecov.yml
index d6c0965a..675020cf 100644
--- a/.github/workflows/codecov.yml
+++ b/.github/workflows/codecov.yml
@@ -50,7 +50,7 @@ jobs:
         architecture: 'x64' # optional x64 or x86. Defaults to x64 if not specified
     - name: Install conan
       run: pip install conan>2
-    - run: python3 Setup.py --options EnableCoverage=True CompileBaryo=True UseVectorization=False
+    - run: python3 Setup.py --options EnableCoverage=True CompileBaryo=True UseVectorization=False --build-missing
 
     - name: Set cmake preset name
       run: python3 .github/GetProfile.py
diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index d53f4a4d..2cb4968f 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -52,7 +52,7 @@ jobs:
         id: cpu-cores
         if: matrix.language == 'cpp'
       - name: Setup
-        run: python3 Setup.py --options CompileBaryo=True
+        run: python3 Setup.py --options CompileBaryo=True --build-missing
         if: matrix.language == 'cpp'
 
       - name: Set cmake preset name
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 0cdfa84c..6fe360ff 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -203,13 +203,14 @@ if(BSMPT_IS_TOPLEVEL)
     set(DOXYGEN_EXCLUDE
         ${CMAKE_CURRENT_SOURCE_DIR}/src/Kfactors/Kfunctions_grid_Part1.cpp
         ${CMAKE_CURRENT_SOURCE_DIR}/src/Kfactors/Kfunctions_grid_Part2.cpp)
+    set(DOXYGEN_EXCLUDE_PATTERNS ${CMAKE_CURRENT_SOURCE_DIR}/src/*/README.md)
     set(DOXYGEN_PROJECT_BRIEF ${CMAKE_PROJECT_DESCRIPTION})
     set(DOXYGEN_EXTRACT_PRIVATE YES)
     set(DOXYGEN_GENERATE_TREEVIEW YES)
     set(DOXYGEN_DISTRIBUTE_GROUP_DOC YES)
     set(DOXYGEN_WARN_IF_UNDOCUMENTED YES)
     set(DOXYGEN_WARN_IF_DOC_ERROR YES)
-    set(DOXYGEN_USE_MDFILE_AS_MAINPAGE README.md)
+    set(DOXYGEN_USE_MDFILE_AS_MAINPAGE ${CMAKE_CURRENT_SOURCE_DIR}/README.md)
 
     doxygen_add_docs(
       doc