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Extracting total non-synonymous and synonymous sites per alignment #1

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jckhearn opened this issue May 20, 2019 · 0 comments
Open

Extracting total non-synonymous and synonymous sites per alignment #1

jckhearn opened this issue May 20, 2019 · 0 comments

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@jckhearn
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Hi @pievos101

Is it possible to extract the total number of predicted non-synonymous and synonymous sites from a "GENOME" object created from on an in frame fasta alignment? I can get SNPs of either category but not invariant sites.

I've sent a question through your weebly site also, sorry for the duplication.

Best wishes,
Jack
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@jckhearn