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Add CSI index support #6

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valeriuo opened this issue Mar 26, 2021 · 0 comments
Open

Add CSI index support #6

valeriuo opened this issue Mar 26, 2021 · 0 comments

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@valeriuo
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We had a request from a BCFtools user to assist in splitting the chromosomes from a VCF file into smaller scaffolds, which can then be indexed in TBI format. The user intends to use the indexed VCF file in a PopGenome analysis, but currently cannot do so, because some chromosome in the file are larger than 229-1, which is the upper limit of the TBI format, and PopGenome apparently does not accept CSI indices, which could accommodate these large chromosomes.

You can find a minimal description of the CSI format here.

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