From 84d237fd7390e33a842aeffb3fff612e071b9984 Mon Sep 17 00:00:00 2001 From: Philippe Veber Date: Sat, 16 Jun 2018 18:01:21 +0200 Subject: [PATCH] docker: added trinity 2.6.6 --- etc/docker-images/trinity/2.6.6/Dockerfile | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 etc/docker-images/trinity/2.6.6/Dockerfile diff --git a/etc/docker-images/trinity/2.6.6/Dockerfile b/etc/docker-images/trinity/2.6.6/Dockerfile new file mode 100644 index 00000000..677d0c2c --- /dev/null +++ b/etc/docker-images/trinity/2.6.6/Dockerfile @@ -0,0 +1,13 @@ +FROM pveber/bistro-base:stretch + +RUN apt-get update && \ + apt-get install -y --allow-unauthenticated libc6 libgcc1 libgomp1 libhts1 libstdc++6 perl jaligner \ + libcommons-collections4-java libgetopt-java libjung-free-java bowtie bowtie2 \ + python libwww-perl default-jre-headless samtools jellyfish r-base-core \ + r-cran-cluster r-bioc-edger r-bioc-qvalue rsem berkeley-express trimmomatic \ + transdecoder parafly curl +RUN wget "https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.6.6.tar.gz" +RUN tar xvfz Trinity-v2.6.6.tar.gz +RUN cd trinityrnaseq-Trinity-v2.6.6 && make && make plugins +RUN cd trinityrnaseq-Trinity-v2.6.6 && cp -r Trinity PerlLib Butterfly Chrysalis Inchworm trinity-plugins util /usr/bin +ENV TRINITY_HOME /trinityrnaseq-Trinity-v2.6.6