From f46795308eee28645497279bc94b5f0af8600b96 Mon Sep 17 00:00:00 2001 From: Gigon Bae Date: Wed, 31 Jul 2024 16:48:57 -0700 Subject: [PATCH] Update dependencies Signed-off-by: Gigon Bae --- conda/environments/all_cuda-118_arch-x86_64.yaml | 10 ++++++++++ conda/environments/all_cuda-125_arch-x86_64.yaml | 10 ++++++++++ conda/recipes/libcucim/meta.yaml | 9 +++++++++ dependencies.yaml | 12 ++++++++++++ 4 files changed, 41 insertions(+) diff --git a/conda/environments/all_cuda-118_arch-x86_64.yaml b/conda/environments/all_cuda-118_arch-x86_64.yaml index 9e0bbb497..82d7e3e34 100644 --- a/conda/environments/all_cuda-118_arch-x86_64.yaml +++ b/conda/environments/all_cuda-118_arch-x86_64.yaml @@ -7,18 +7,23 @@ channels: - nvidia dependencies: - GPUtil>=1.4.0 +- boost-cpp - c-compiler +- catch2 +- cli11 - click - cmake>=3.26.4,!=3.30.0 - cuda-version=11.8 - cudatoolkit - cupy>=12.0.0 - cxx-compiler +- fmt - gcc_linux-64=11.* - imagecodecs>=2021.6.8 - ipython - jbig - lazy_loader>=0.1 +- libabseil - libcufile-dev=1.4.0.31 - libcufile=1.4.0.31 - libnvjpeg-dev=11.6.0.55 @@ -27,14 +32,18 @@ dependencies: - matplotlib-base - nbsphinx - ninja +- nlohmann_json - numpy>=1.23.4,<2.0a0 - numpydoc>=1.5 - nvcc_linux-64=11.8 +- nvtx-c >=3.1.0 - openslide-python>=1.3.0 - pip - pooch>=1.6.0 - pre-commit - psutil>=5.8.0 +- pybind11 +- pybind11_json - pydata-sphinx-theme - pytest-cov>=2.12.1 - pytest-lazy-fixture>=0.6.3 @@ -47,6 +56,7 @@ dependencies: - scipy>=1.6.0 - sphinx<6 - sysroot_linux-64==2.17 +- taskflow - tifffile>=2022.7.28 - xz - yasm diff --git a/conda/environments/all_cuda-125_arch-x86_64.yaml b/conda/environments/all_cuda-125_arch-x86_64.yaml index d183e447d..facb073b9 100644 --- a/conda/environments/all_cuda-125_arch-x86_64.yaml +++ b/conda/environments/all_cuda-125_arch-x86_64.yaml @@ -7,7 +7,10 @@ channels: - nvidia dependencies: - GPUtil>=1.4.0 +- boost-cpp - c-compiler +- catch2 +- cli11 - click - cmake>=3.26.4,!=3.30.0 - cuda-cudart-dev @@ -15,11 +18,13 @@ dependencies: - cuda-version=12.5 - cupy>=12.0.0 - cxx-compiler +- fmt - gcc_linux-64=11.* - imagecodecs>=2021.6.8 - ipython - jbig - lazy_loader>=0.1 +- libabseil - libcufile-dev - libnvjpeg-dev - libnvjpeg-static @@ -27,13 +32,17 @@ dependencies: - matplotlib-base - nbsphinx - ninja +- nlohmann_json - numpy>=1.23.4,<2.0a0 - numpydoc>=1.5 +- nvtx-c >=3.1.0 - openslide-python>=1.3.0 - pip - pooch>=1.6.0 - pre-commit - psutil>=5.8.0 +- pybind11 +- pybind11_json - pydata-sphinx-theme - pytest-cov>=2.12.1 - pytest-lazy-fixture>=0.6.3 @@ -46,6 +55,7 @@ dependencies: - scipy>=1.6.0 - sphinx<6 - sysroot_linux-64==2.17 +- taskflow - tifffile>=2022.7.28 - xz - yasm diff --git a/conda/recipes/libcucim/meta.yaml b/conda/recipes/libcucim/meta.yaml index b373ffbbe..3be360d5d 100644 --- a/conda/recipes/libcucim/meta.yaml +++ b/conda/recipes/libcucim/meta.yaml @@ -74,10 +74,19 @@ requirements: - libnvjpeg-dev - libnvjpeg-static {% endif %} + - boost-cpp + - catch2 + - cli11 + - fmt - jbig + - libabseil - libwebp-base - nvtx-c >=3.1.0 + - nlohmann_json - openslide + - pybind11 + - pybind11_json + - taskflow - xz - zlib - zstd diff --git a/dependencies.yaml b/dependencies.yaml index 840cea8eb..0dc7046d7 100644 --- a/dependencies.yaml +++ b/dependencies.yaml @@ -101,6 +101,18 @@ dependencies: - output_types: [requirements, pyproject] packages: - wheel + - output_types: [conda] + packages: + - boost-cpp + - catch2 + - cli11 + - fmt + - libabseil + - nvtx-c >=3.1.0 + - nlohmann_json + - pybind11 + - pybind11_json + - taskflow specific: - output_types: conda matrices: