diff --git a/clinotator/clinotator.py b/clinotator/clinotator.py index 309495e..7e8eb31 100755 --- a/clinotator/clinotator.py +++ b/clinotator/clinotator.py @@ -188,4 +188,4 @@ def main(): sys.exit() if __name__ == '__main__': - main() \ No newline at end of file + main() diff --git a/clinotator/global_vars.py b/clinotator/global_vars.py index 41a6d97..a6e336a 100644 --- a/clinotator/global_vars.py +++ b/clinotator/global_vars.py @@ -94,3 +94,4 @@ ('Likely pathogenic', 8.4), ('Pathogenic/Likely pathogenic', 15), ('Pathogenic', 10000000)] + diff --git a/clinotator/variation.py b/clinotator/variation.py index db316ff..4265822 100644 --- a/clinotator/variation.py +++ b/clinotator/variation.py @@ -228,7 +228,7 @@ def analysis_stats(self): if self.CVNA < 2: self.CTPS = None - self.CTRR = None + self.CTRR = "." return # logging.debug('CTRS score: {}'.format(self.CTRS)) @@ -254,7 +254,7 @@ def analysis_stats(self): logging.warning('ClinVar significance for {} does not include B,B/LB' ',LB,US,LP,LP/P,P'.format(self.VID)) self.CTPS = None - self.CTRR = None + self.CTRR = "." return self.CTRR = reclassification_tree(ctps_index, cvcs_index)