posters.bib

@inproceedings{perlman_kndi_2017,
  author = {Perlman, Eric},
  address = {Kavli},
  title = {NEURODATA: ENABLING BIG DATA NEUROSCIENCE},
  url = {https://neurodata.io/talks/perlman_kndi_2017.pdf},
  year = {2017}
}

@inproceedings{berlin_2017,
  author = {Baden, Alex and Perlman, Eric and  Collman, Forrest and Smith, Stephen and Vogelstein, Joshua T. and Burns, Randal},
  author+an = {1=trainee;5=highlight},
  address = {Berlin},
  title = {Processing and Analyzing Terascale Conjugate Array Tomography Data},
  url = {https://neurodata.io/talks/berlin_2017.pdf},
  year = {2017}
}

@inproceedings{falk_open_data2019,
  author = {Falk, Benjamin and Vogelstein, Joshua T.},
  author+an = {2=highlight},
  address = {Harvard University},
  title = {NeuroData's Open Data Cloud Ecosystem},
  month = {July},
  url = {https://neurodata.io/talks/25_NeuroDatas_Open_Data_Ecosystem.pdf},
  year = {2019}
}
@inproceedings{j12019,
  title={Clustering Multi-Modal Connectomes},
  author={Chung, Jaewon and Pedigo, Benjamin D. and Priebe, Carey E. and Vogelstein, Joshua T.},
  author+an = {1=trainee;2=trainee;4=highlight},
  address={OHBM 2019},
  url={https://figshare.com/articles/Clustering_Multi-Modal_Connectomes/8309672},
  year={2019}
}
@inproceedings{browneposter2019,
  title={Forest Packing: Fast Parallel Decision Forests},
  author={Browne, James and Mhembere, Disa and Tomita, Tyler M. and Vogelstein, Joshua T. and Burns, Randal},
  author+an = {1=trainee;2=trainee;3=trainee;4=highlight},
  address={SIAM International Conference on Data Mining},
  url={https://figshare.com/articles/Forest_Packing_Fast_Parallel_Decision_Forests/8194142},
  year={2019}
}
@inproceedings{pedigo2019,
  title={GraSPy: an Open Source Python Package for Statistical Connectomics},
  author={Pedigo, Benjamin D. and Chung, Jaewon and Bridgeford, Eric W. and Varjavand, Bijan and Priebe, Carey E. and Vogelstein, Joshua T.},
  author+an = {1=trainee;2=trainee;3=trainee;4=trainee;6=highlight},
  address={Max Planck /HHMI Connectomics Meeting Berlin},
  url={https://figshare.com/articles/GraSPy_an_Open_Source_Python_Package_for_Statistical_Connectomics/7982888},
  year={2019}
}
@inproceedings{chun2019struct,
  title={Human Structural Connectomes are Heritable},
  author={Chung, Jaewon and Pedigo, Benjamin D. and Priebe, Carey E. and Vogelstein, Joshua T.},
  author+an = {1=trainee;2=trainee;4=highlight},
  address={BME data science poster session},
  url={https://figshare.com/articles/Structural_Connectomes_are_Heritable/7800587},
  year={2019}
}
@inproceedings{sikka2014towards,
  title={Towards automated analysis of connectomes: The configurable pipeline for the analysis of connectomes (c-pac)},
  author={Sikka, Sharad AND Cheung, Brian AND Khanuja, Ranjit AND Ghosh, Satra AND Yan, Chao-gan AND Li, Qingyang AND Vogelstein, Joshua AND Burns, Randal AND Colcombe, Stanley AND Craddock, Cameron AND Mennes, Maarten AND Kelly, Clare AND Dimartino, Adriana AND Castellanos, Francisco AND Milham, Michael },
  author+an = {7=highlight},
  address={5th INCF Congress of Neuroinformatics, Munich, Germany},
  volume={10},
  url={https://www.frontiersin.org/10.3389/conf.fninf.2014.08.00117/event_abstract},
  year={2014}
}
@inproceedings{koutra2013all,
  title={Are All Brains Wired Equally?},
  author={Koutra, Danai and Gong, Yu and Ryman, Sephira and Jung, Rex and Vogelstein, Joshua T. and Faloutsos, Christos},
  author+an = {5=highlight},
  url={http://dx.doi.org/10.6084/m9.figshare.1284149},
  address={Proceedings of the 19th Annual Meeting of the Organization for Human Brain Mapping (OHBM)},
  volume={1},
  number={4.2},
  pages={3},
  year={2013}
}
@inproceedings{Craddock2013a,
author={Sikka, Sharad AND Cheung, Brian AND Khanuja, Ranjit AND Ghosh, Satra AND Yan, Chao-gan AND Li, Qingyang AND Vogelstein, Joshua AND Burns, RandalTheChair AND Colcombe, Stanley AND Craddock, Cameron AND Mennes, Maarten AND Kelly, Clare AND Dimartino, Adriana AND Castellanos, Francisco AND Milham, Michael },
author+an = {7=highlight},
title={Towards Automated Analysis of Connectomes: The Configurable Pipeline for the Analysis of Connectomes (C-PAC)},
journal={Frontiers in Neuroinformatics},
year = {2013},
url={http://www.frontiersin.org/neuroinformatics/10.3389/conf.fninf.2014.08.00117/full},
}


@inproceedings{Vogelstein2015a,
author = {Chen, Shaojie and Vogelstein, Joshua T and Lee, Seonjoo and Lindquist, Martin and Caffo, Brian},
author+an = {1=trainee;2=highlight},
address = {ENAR 2015},
title = {High Dimensional State Space Model with L-1 and L-2 Penalties},
url = {http://www.enar.org/abstracts/2015_Program_Abstracts_03-02-15.pdf},
year = {2015}
}
@inproceedings{_Nonparametric_2013,
author = {Vogelstein, Joshua T and Priebe, Carey E},
author+an = {1=highlight},
address = {Duke Workshop on Sensing and Analysis of HighDimensional Data},
title = {Nonparametric Two-Sample Testing on Graph-Valued Data.},
year = {2013}
}
@inproceedings{Qin2013a,
author = { Qin, Yichen and Mhembere, Disa and Ryman, Sephira and Jung, Rex and Vogelstein, R. Jacob and Burns, Randal and Vogelstein, Joshua and Priebe, Carey },
author+an = {2=trainee;5=highlight},
address = {OHBM},
title = {Robust Clustering of Adjacency Spectral Embeddings of Brain Graph Data via Lq-Likelihood},
url = {http://dx.doi.org/10.6084/m9.figshare.1284153},
year = {2013}
}
@inproceedings{Sussman2013,
author = { Sussman, Daniel L and Mhembere, Disa and Ryman, Sephira and Jung, Rex and Vogelstein, R. Jacob and Burns, Randal and Vogelstein, Joshua T and Priebe, Carey E },
author+an={2=trainee,7=highlight},
address = {OHBM},
title = {Massive Diffusion MRI Graph Structure Preserves Spatial Information},
url = {http://dx.doi.org/10.6084/m9.figshare.1284155},
year = {2013}
}
@inproceedings{Mhembere2013a,
author = { Mhembere, Disa AND Burns, Randal AND Vogelstein, Joshua T. AND Vogelstein, R. Jacob AND Sussman, Daniel AND Preibe, Carey AND Jung, Rex, AND Ryman, Sephira },
author+an={1=trainee;2=highlight},
title = {Multivariate Invariants from Massive Brain-Graphs},
url = {http://dx.doi.org/10.6084/m9.figshare.1284154},
address = {OHBM},
year = {2013}
}
@inproceedings{Gray2013,
author= { Gray Roncal, William AND Kleissas, Dean M. AND Burck, James M. AND Manavalan, Priya AND Vogelstein, Joshua T. AND Perlman, Eric AND Burns, Randal AND Vogelstein, R. Jacob },
author+an={1=trainee;5=highlight},
address = {OHBM},
title = {Towards a Fully Automatic Pipeline for Connectome Estimation from High-Resolution EM Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284151},
year = {2013}
}
@inproceedings{Sismanis2013,
author = { Sismanis, N. AND Sussman, D. L. AND Vogelstein, J. T. AND Gray, W. AND Vogelstein, R. J. AND Perlman, E. AND Mhembere, D. AND Ryman, S. AND Jung, R. AND Burns, R. AND Priebe, C. E. AND Pitsianis, N. AND Sun, X.  },
author+an={3=highlight;4=trainee;7=trainee},
address = {5th Panhellic Conference on Biomedical Technology},
title = {Feature Clustering from a Brain Graph for Voxel-to-Region Classification},
url = {http://dx.doi.org/10.6084/m9.figshare.1284143},
year = {2013}
}
@inproceedings{Vogelstein2013c,
author = {Vogelstein, Joshua T and others},
author+an = {1=highlight},
address = {DARPA XDATA Colloquium},
title = {{Anomaly Screening and Clustering of Multi-OBject Movies via Multiscale Structure Learning}},
year = {2013}
}
@inproceedings{Pnevmatikakis2013,
author = { Pnevmatikakis, Eftychios A. AND Machado, Tim AND Grosenick, Logan AND Poole, Ben AND Vogelstein, Joshua T. AND Paninsk Liam },
author+an = {5=highlight},
address = {COSYNE},
title = {Rank-penalized nonnegative spatiotemporal deconvolution and demixing of calcium inaging data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284170},
year = {2013}
}
@inproceedings{Airan2013,
author = { Raag D, Airan AND Vogelstein, Joshua AND Caffo, Brian AND Pekar, James J AND Haris I, Sair },
author+an = {2=highlight},
address = {Proc ISMRM},
pages = {1932},
title = {Reproducible differentiation of individual of individual subjects with minimal acquisition time via resting state fMRI},
url = {http://dx.doi.org/10.6084/m9.figshare.1284146},
year = {2013}
}
@inproceedings{Gray2012b,
author = { Gray, William R. AND Kleissas, Dean M. AND Burck, James M. AND Vogelstein, Joshua T. AND Perlman, Eric AND Burlina, Philippe M. AND Burns, Randal AND Vogelstein R. Jacob },
author+an= {4=highlight;1=trainee},
address = {Cold Spring Harbor Laboratory, Neuronal Circuits},
title = {Towards a Fully Automatic Pipeline for Connectome Estimation from High-Resolution EM Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284176},
year = {2012}
}
@inproceedings{Vogelstein2012a,
author = { Vogelstein, Joshua T. AND Bock, Davi AND Gray, William AND Sussman, Daniel AND Burns, Randal AND Kleissas, Dean AND Marchette, David AND Fishkind, Donniell E. AND Tang, Minh AND Hager, Greg AND Vogelstein, R. Jacob AND Priebe Carey E.  },
author+an = {1=highlight;3=trainee},
address = {Janelia Farm conference, Statistical Inference and Neuroscience},
title = {Statistical Connectomics},
url = {http://dx.doi.org/10.6084/m9.figshare.1284174},
year = {2012}
}
@inproceedings{Vogelstein2012,
author = { Vogelstein, J. AND Sikka, S. AND Cheung, B. AND Khanuja, R. AND Li, Q. AND Yan C,.G. AND Priebe, C. AND Calhoun, V. AND Vogelstein, R. J. AND Milham, M. AND Burns, R.},
author+an = {1=highlight},
address = {Neuroinformatics},
title = {BRAINSTORM towards clinically and scientifically useful neuroimaging analytics},
url = {http://dx.doi.org/10.6084/m9.figshare.1284173},
year = {2012}
}
@inproceedings{Vogelstein2011g,
author = {Vogelstein, J T and Fishkind, D E and Sussman, D L and Priebe, C E},
author+an = {1=highlight},
address = {IMA conference on Large Graphs},
title = {Large graph classification: theory and statistical connectomics applications},
url = {http://dx.doi.org/10.6084/m9.figshare.1284184},
year = {2011}
}
@inproceedings{Vogelstein2011f,
author = {Vogelstein, Joshua T and Sussman, D L and Tang, M and Fishkind, D E and Priebe, Carey E},
author+an = {1=highlight},
address = {IMA conference on Large Graphs},
title = {{Dot product embedding in large (errorfully observed) graphs with applications in statistical connectomics}},
year = {2011}
}
@inproceedings{Vogelstein2011h,
author = {Vogelstein, Joshua T and Gray, William R and Vogelstein, R Jacob and Bogovic, J and Resnick, S and Prince, J and Priebe, Carey E},
author+an = {1=highlight;2=trainee},
address = {Organization for Human Brain Mapping},
title = {Connectome Classification: Statistical Graph Theoretic Methods for Analysis of MR-Connectome Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284179},
year = {2011}
}
@article{Vogelstein2011e,
author = {Vogelstein, Joshua T and Perlman, E and Bock, D and Lee, W C and Chang, M and Kasthuri, B and Kazhdan, M and Reid, C and Lichtman, J and Burns, R and Vogelstein, R Jacob},
author+an = {1=highlight},
journal = {Neuroinformatics},
title = {Open Connectome Project: collectively reverse engineering the brain one synapse at a time},
url = {http://dx.doi.org/10.6084/m9.figshare.1284181},
year = {2011}
}
@inproceedings{Vogelstein2011d,
author = {Vogelstein, Joshua T and Gray, W and Martin, J G and Coppersmith, G C and Dredze, M and Bogovic, J and Prince, J L and Resnick, S M and Priebe, Carey E and Vogelstein, R J},
author+an = {1=highlight;2=trainee},
address = {Society for Neuroscience},
title = {Connectome Classification using statistical graph theory and machine learning},
url = {http://dx.doi.org/10.6084/m9.figshare.1284178},
year = {2011}
}
@inproceedings{Gray2011,
author = {Gray, William R and Bogovic, J A and Vogelstein, Joshua T and Ye, C and Landman, B A and Prince, J L and Vogelstein, R Jacob},
author+an = {3=highlight;1=trainee},
address = {Society for Neuroscience},
title = {Magnetic resonance connectome automated pipeline and repeatability analysis},
url = {http://dx.doi.org/10.6084/m9.figshare.1284177},
year = {2011}
}
@inproceedings{Vogelstein2010d,
author = {Vogelstein, Joshua T and Priebe, Carey E and Burns, R and Vogelstein, R Jacob and Lichtman, J},
author+an = {1=highlight},
address = {DARPA Neural Engineeering, Science and Technology Forum},
title = {Measuring and reconstructing the brain at the synaptic scale: towards a biofidelic human brain in silico},
url = {http://dx.doi.org/10.6084/m9.figshare.1285813},
year = {2010}
}
@inproceedings{Gray2010,
author = {Gray, William R and Vogelstein, Joshua T and Bogovic, J and Carass, A and Prince, J L and Landman, B and Pham, D and Ferrucci, L and Resnick, S M and Priebe, Carey E and Vogelstein, R Jacob},
author+an = {2=highlight;1=trainee},
address = {DARPA Neural Engineering, Science and Technology Forum},
title = {Graph-Theoretical Methods for Statistical Inference on MR Connectome Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1285815},
year = {2010}
}
@inproceedings{Vogelstein2010c,
author = {Vogelstein, Joshua T and Bogovic, J and Carass, A and Gray, WR and Prince, JL and Landman, B and Pham, D and Ferrucci, L and Resnick, SM and Priebe, Carey E and Vogelstein, RJ},
author+an = {1=highlight;4=trainee},
address = {Organization for Human Brain Mapping},
title = {Graph-Theoretical Methods for Statistical Inference on MR Connectome Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1285813},
year = {2010}
}
@inproceedings{Vogelstein2010b,
author = {Vogelstein, Joshua T and Vogelstein, RJ and Priebe, Carey E},
author+an = {1=highlight},
address = {CSHL conference on Neural Circuits},
title = {A Neurocognitive Graph-Theoretical Approach to Understanding the Relationship Between Minds and Brains},
url = {http://dx.doi.org/10.6084/m9.figshare.1284694},
year = {2010}
}
@inproceedings{Vogelstein2010a,
author = {Vogelstein, Joshua T and Mishchenki, Y and Packer, AM and Machado, TA and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {COSYNE},
title = {Towards Confirming Neural Circuit Inference from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1284693},
year = {2010}
}
@inproceedings{Vogelstein2009b,
address = {NIPS Workshop on Workshop on Connectivity Infernence in Neuroimaging},
author = {Vogelstein, Joshua T and Mishchchenko, Y and Packer, A M and Machado, T A and Yuste, R and Paninski, L},
author+an = {1=highlight},
title = {Towards Confirming Neural Circuits from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285822},
year = {2009}
}
@inproceedings{Vogelstein2010e,
author = {Vogelstein, Joshua T and Mishchenki, Y and Packer, AM and Machado, TA and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {COSYNE},
title = {Towards Inferring Neural Circuit Inference from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285819},
year = {2010}
}
@inproceedings{Vogelstein2009c,
author = {Vogelstein, Joshua T and Mishchenki, Y and Packer, AM and Machado, TA and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {COSYNE},
title = {Towards Inferring Neural Circuit Inference from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285821},
year = {2009}
}
@inproceedings{Vogelstein2008a,
author = {Vogelstein, Joshua T and Babadi, B and Watson, BO and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {Society for Neuroscience},
title = {From Calcium Sensitive Fluorescence Movies to Spike Trains},
url = {http://dx.doi.org/10.6084/m9.figshare.1285824},
year = {2008}
}
@inproceedings{Vogelstein2008c,
author = {Vogelstein, Joshua T and Babadi, B and Paninski, L},
author+an = {1=highlight},
address = {COSYNE},
title = {Model-Based Optimal Inference of Spike-Times and Calcium Dynamics given Noisy and Intermittent Calcium-Fluorescence Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285826},
year = {2008}
}
@inproceedings{Vogelstein2008b,
author = {Vogelstein, Joshua T and Paninski, L},
author+an = {1=highlight},
address = {Integrative Approaches to Brain Complexity},
title = {Inferring Spike Trains, Learning Tuning Curves, and Estimating Connectivity from Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285827},
year = {2008}
}
@inproceedings{Vogelstein2007b,
author = {Vogelstein, Joshua T and Jedynak, B and Zhang, K and Paninski, L},
author+an = {1=highlight},
address = {Society for Neuroscience},
title = {Inferring Spike Trains, Neural Filters, and Network Circuits from in vivo Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285846},
year = {2007}
}
@inproceedings{Vogelstein2007a,
author = {Vogelstein, Joshua T and Zhang, K and Jedynak, B and Paninski, L},
author+an = {1=highlight},
address = {COSYNE},
title = {Maximum Likelihood Inference of Neural Dynamics under Noisy and Intermittent Observations using Sequential Monnte Carlo EM Algorithms},
url = {http://dx.doi.org/10.6084/m9.figshare.1285828},
year = {2007}
}
@inproceedings{Vogelstein2004,
author = {Vogelstein, Joshua T and Zhang, K},
author+an = {1=highlight},
address = {Society for Neuroscience},
title = {A novel theory for simultaneous representation of multiple dynamic states in hippocampus},
year = {2004}
}
@inproceedings{Vogelstein2002,
author = {Vogelstein, Joshua T and Snyder, LH and Warchol, M and Angelaki, DE},
author+an = {1=highlight},
address = {Society for Neuroscience},
title = {Up-down asymmetry in memory guided saccadic eye movements are independent of head orientation in space},
year = {2002}
}
@inproceedings{Vogelstein2002,
author = {Vogelstein, Joshua T and Snyder, LH and Warchol, M and Angelaki, DE},
author+an = {1=highlight},
address = {Society for Neuroscience},
title = {Up-down asymmetry in memory guided saccadic eye movements are independent of head orientation in space},
year = {2002}
}
@inproceedings{Sparse2015,
author = {Chen, Shaojie and Liu, Kai and Yuguang, Yang and Seonjoo, Lee and Lindquist, Martin and Caffo, Brian and Vogelstein, Joshua T},
author+an = {1=trainee;7=highlight},
address = {Figshare},
title = {A Sparse High Dimensional State-Space Model with an Application to Neuroimaging Data},
year = {2015},
url = {https://figshare.com/articles/A_Sparse_High_Dimensional_State_Space_Model_with_an_Application_to_Neuroimaging_Data/1515020}
}
@inproceedings{Design2015,
author = {Wang, Shangsi and Yang, Zhi and Zuo, Xi-Nian and Milham, Michael and Craddock, Cameron and Priebe, Carey E. and Vogelstein, Joshua T.},
author+an = {1=trainee;7=highlight},
address = {Figshare},
title = {Optimal Design for Discovery Science: Applications in Neuroimaging},
year = {2015},
url = {https://figshare.com/articles/Optimal_Design_for_Discovery_Science_Applications_in_Neuroimaging/1515021}
}
@inproceedings{XBrain2015,
author = {Deyer, Eva L. and Fernandes, Hugo L. and Roncal, Will Gray and Gursoy, Doga and Vogelstein, Joshua T and Xiao, Xianghui and Jacobsen, Chris and Kording, Konrad P. and Kasthuri, Narayanan},
author+an = {5=highlight;3=trainee},
address = {Figshare},
title = {X-Brain: Quantifying Mesoscale Neuroanatomy Using X-ray Microtomography},
year = {2015},
url = {https://figshare.com/articles/X_Brain_Quantifying_Mesoscale_Neuroanatomy_Using_X_Ray_Microtomography/1585163}
}
@inproceedings{Allen2015synaptome,
author = {Smith, Stephen J. and Burns, Randal and Chevillet, Mark and Lein, Ed and Sapiro, Guillermo and Seeley, William and Trimmer, James and Vogelstein, Joshua T and Weinberg, Richard},
author+an = {8=highlight},
address = {Society for Neuroscience},
title = {The Open Synaptome Project: Toward a Microscopy-Based Platform for Single-synapse Analysis of Diverse Populations of CNS Synapses},
year = {2015},
url = {https://figshare.com/articles/Open_Synaptome_Project/1585165}
}
@inproceedings{Vogelstein2015sfn,
author = {Vogelstein, Joshua T},
author+an = {1=highlight},
address = {Society for Neuroscience},
title = {Open Connectome Project \& NeuroData: Enabling Data-Driven Neuroscience at Scale},
year = {2015},
url = {https://figshare.com/articles/NeuroData_amp_The_Open_Connectome_Project_Enabling_Big_Data_Neuroscience_at_Scale/1585167}
}