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一个450K芯片的cg位点在多个TCGA肿瘤的pattern #39

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iamhealthy opened this issue Oct 31, 2023 · 5 comments
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一个450K芯片的cg位点在多个TCGA肿瘤的pattern #39

iamhealthy opened this issue Oct 31, 2023 · 5 comments

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@iamhealthy
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王诗翔,你好:我想看来自450K芯片的具体1个cg位点在多个TCGA肿瘤的beta value模式,有高效的策略吗?像下面这个图(PMID: PMID: 35790732,Fig S1b)。非常感谢。
image

@github-actions
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Thanks for reporting, Shixiang will reply as soon as possible:)

@ShixiangWang
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@iamhealthy 单个位点的数据展示目前我们还不支持。

@lishensuo 你帮我确定下哈

@iamhealthy
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谢谢。期待有解决方案啊:-)。在在线xena browser网页,倒是可以看/下载单个cg位点在具体一个肿瘤(tumor vs. control)的beta value。但如果想看该位点在多个肿瘤的变化,难道要一个肿瘤一个肿瘤的手动操作?如果是要分别看5位点cg位点,更麻烦。:-)。谢谢~~

@ShixiangWang
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这个我们已经实现按单个甲基化水平在泛瘤种的表达了。具体有问题再交流

@ShixiangWang
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image

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