diff --git a/.Rbuildignore b/.Rbuildignore index 5431958b..2877c105 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -16,4 +16,4 @@ vignettes/cache/ cran-comments.md ^\.httr-oauth$ ^CONDUCT\.md$ - +tests/test-all.R diff --git a/DESCRIPTION b/DESCRIPTION index ca3398b8..e3336d8d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Package: taxize Title: Taxonomic Information from Around the Web Description: Interacts with a suite of web 'APIs' for taxonomic tasks, such as verifying species names, and getting taxonomic 'hierarchies'. -Version: 0.7.4.99993 +Version: 0.7.5 License: MIT + file LICENSE URL: https://github.com/ropensci/taxize BugReports: https://github.com/ropensci/taxize/issues diff --git a/NEWS.md b/NEWS.md index 93195169..e831f9b5 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,14 +1,20 @@ taxize 0.7.5 ============ -## MINOR IMPROVEMENTS - -* xxx (#xxx) -* xxx (#xxx) - ## BUG FIXES -* xxx (#xxx) +* Fixed bug in the package dependency `bold`, which fixes +`taxize::bold_search()`, so no actual changes in `taxize` for +this, but take note (#521) +* Fixed problem in `gnr_resolve()` where we indexed to data +incorrectly. And added tests to account for this problem. +Thanks @raredd ! (#519) (#520) +* Fixed bug in `iucn_summary()` introduced in last version. +`iucn_summary()` now uses the package `rredlist`, which requires +an API key, and I didn't document how to use the key. Function +now allows user to pass the key in as a parameter, and documents +how to get a key and save it in either `.Renviron` or in +`.Rprofile` (#522) taxize 0.7.4 diff --git a/README.Rmd b/README.Rmd index 3b0804b0..f94e4cc6 100644 --- a/README.Rmd +++ b/README.Rmd @@ -15,7 +15,7 @@ knitr::opts_chunk$set( [![Build status](https://ci.appveyor.com/api/projects/status/6mgc02mkd8j4sq3g/branch/master)](https://ci.appveyor.com/project/sckott/taxize-175/branch/master) [![codecov.io](https://codecov.io/github/ropensci/taxize/coverage.svg?branch=master)](https://codecov.io/github/ropensci/taxize?branch=master) [![rstudio mirror downloads](http://cranlogs.r-pkg.org/badges/taxize)](https://github.com/metacran/cranlogs.app) -[![cran version](http://www.r-pkg.org/badges/version/taxize)](http://cran.rstudio.com/web/packages/taxize) +[![cran version](http://www.r-pkg.org/badges/version/taxize)](https://cran.r-project.org/package=taxize) `taxize` allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information - among other things. @@ -155,7 +155,7 @@ Note that a few data sources require SOAP web services, which are difficult to s -**: There are none! We suggest using `TPL` and `TPLck` functions in the [taxonstand package](https://cran.rstudio.com/package=Taxonstand). We provide two functions to get bullk data: `tpl_families` and `tpl_get`. +**: There are none! We suggest using `TPL` and `TPLck` functions in the [taxonstand package](https://cran.r-project.org/package=Taxonstand). We provide two functions to get bullk data: `tpl_families` and `tpl_get`. \***: There are none! The function scrapes the web directly. diff --git a/README.md b/README.md index 31cac831..52c6b358 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ taxize [![Build status](https://ci.appveyor.com/api/projects/status/6mgc02mkd8j4sq3g/branch/master)](https://ci.appveyor.com/project/sckott/taxize-175/branch/master) [![codecov.io](https://codecov.io/github/ropensci/taxize/coverage.svg?branch=master)](https://codecov.io/github/ropensci/taxize?branch=master) [![rstudio mirror downloads](http://cranlogs.r-pkg.org/badges/taxize)](https://github.com/metacran/cranlogs.app) -[![cran version](http://www.r-pkg.org/badges/version/taxize)](http://cran.rstudio.com/web/packages/taxize) +[![cran version](http://www.r-pkg.org/badges/version/taxize)](https://cran.r-project.org/package=taxize) `taxize` allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information - among other things. @@ -148,7 +148,7 @@ Note that a few data sources require SOAP web services, which are difficult to s -**: There are none! We suggest using `TPL` and `TPLck` functions in the [taxonstand package](https://cran.rstudio.com/package=Taxonstand). We provide two functions to get bullk data: `tpl_families` and `tpl_get`. +**: There are none! We suggest using `TPL` and `TPLck` functions in the [taxonstand package](https://cran.r-project.org/package=Taxonstand). We provide two functions to get bullk data: `tpl_families` and `tpl_get`. \***: There are none! The function scrapes the web directly. diff --git a/cran-comments.md b/cran-comments.md index eb42f986..769fc982 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,8 +1,7 @@ -R CMD CHECK passed on my local OS X install with R 3.2.4 and +R CMD CHECK passed on my local OS X install with R 3.2.4 Patched and R development version, Ubuntu running on Travis-CI, and Win builder. -This submission includes many bug fixes and improvements, and a new function, detailed -in NEWS +This submission includes a few bug fixes, detailed in NEWS.md Thanks! Scott Chamberlain