Bioconductor installation issue for R 3.6.0

[colearendt]

https://community.rstudio.com/t/rstudio-connect-packrat-chokes-on-bioconductor-packages/36706

This community thread discusses changes to R 3.6.0, for which:

Bioconductor packages need to be installed using BiocManager::install().

Similar issue within packrat: rstudio/packrat#573

[kevinushey]

This should already be handled in renv:

renv/R/bioconductor.R

Lines 34 to 47 in 729e33e

	# try both BiocManager, BiocInstaller to get Bioc repositories
	getters <- list(
	BiocManager = function() {
	BiocManager <- asNamespace("BiocManager")
	BiocManager$repositories()
	},
	BiocInstaller = function() {
	BiocInstaller <- asNamespace("BiocInstaller")
	BiocInstaller$biocinstallRepos()
	}
	)

Please file a reprex if you see that's not the case.