.cirrus.yml

# cirrus-ci task definition for the htslib-crypt4gh plugin

timeout_in: 10m

#--------------------------------------------------
# Template: htslib clone & build
#
# We try to clone htslib using the same branch name and owner as this
# htslib-crypt4gh branch.  If it exists, it's likely the user is making a
# joint PR and wants both checked in unison.
# Failing that we use samtools/htslib:develop.
# Note this only works on the users own forks.  Once in the samtools
# organisation the branch name becomes pull/<num>.

# Logic for choosing which to use is in the .ci_helpers/clone script.
# Note we could also use "clone_script" if we want to replace the samtools
# clone with our own commands too.
clone_template: &HTSLIB_CLONE
  htslib_clone_script: |
    printenv CIRRUS_CHANGE_TITLE
    .ci_helpers/clone "https://github.com/${CIRRUS_REPO_OWNER}/htslib" "${HTSDIR}" "${CIRRUS_BRANCH}" `printenv CIRRUS_CHANGE_TITLE | sed -n 's/.*htslib#\([0-9]*\).*/\1/p'`

# Build a cut down HTSlib.  We need plugins, but can disable some parts we're
# not testing
htslib_compile_template: &HTSLIB_COMPILE
  << : *HTSLIB_CLONE
  htslib_compile_script: |
    cd $HTSDIR
    autoreconf -i
    ./configure --disable-bz2 --disable-lzma --disable-libcurl --enable-plugins || (cat config.log; /bin/false)
    make -j3

#--------------------------------------------------
# Template: plugin compile and test

compile_template: &COMPILE
  << : *HTSLIB_COMPILE

  compile_script: |
    autoreconf -i
    ./configure --with-htslib="$HTSDIR" || \
        (cat config.log; /bin/false)
    make -j3

test_template: &TEST
  test_script: |
    make test

#--------------------------------------------------
# Task: linux builds.

# Debian + latest GCC
gcc_task:
  name: debian-gcc
  container:
    image: gcc:latest
    cpu: 2
    memory: 1G

  environment:
    LC_ALL: C
    CIRRUS_CLONE_DEPTH: 1
    HTSDIR: ./hidden-htslib

  install_script: |
    apt update
    apt install -y --no-install-suggests --no-install-recommends libsodium-dev

  << : *COMPILE
  << : *TEST