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modules.json
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modules.json
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{
"name": "sanger-tol/genomeassembly",
"homePage": "https://github.com/sanger-tol/genomeassembly",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/concat": {
"branch": "master",
"git_sha": "582ff1755bdd205c65e2ba4c31e0a008dae299ec",
"installed_by": ["modules"]
},
"bcftools/consensus": {
"branch": "master",
"git_sha": "fa12afdf5874c1d11e4a20efe81c97935e8eea24",
"installed_by": ["modules"]
},
"bcftools/index": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"bcftools/norm": {
"branch": "master",
"git_sha": "0435e4eebc94e53721c194b2d5d06f455a79e407",
"installed_by": ["modules"]
},
"bcftools/sort": {
"branch": "master",
"git_sha": "4a21e4cca35e72ec059abd67f790e0b192ce5d81",
"installed_by": ["modules"]
},
"bcftools/view": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"bedtools/bamtobed": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"],
"patch": "modules/nf-core/bedtools/bamtobed/bedtools-bamtobed.diff"
},
"busco": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"bwamem2/index": {
"branch": "master",
"git_sha": "bfed129da5134b4439b1821c917972570d44d39c",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"cooler/cload": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cooler/zoomify": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "76cc4938c1f6ea5c7d83fed1eeffc146787f9543",
"installed_by": ["modules"]
},
"fastk/fastk": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"fastk/histex": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"freebayes": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"],
"patch": "modules/nf-core/freebayes/freebayes.diff"
},
"gatk4/mergevcfs": {
"branch": "master",
"git_sha": "643756685546fa61f5c8fba439af746c090b9180",
"installed_by": ["modules"]
},
"genescopefk": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"gfastats": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"],
"patch": "modules/nf-core/gfastats/gfastats.diff"
},
"gunzip": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"hifiasm": {
"branch": "master",
"git_sha": "aecb06fcdb995ff3e3df7c7a1fd119367d6d1996",
"installed_by": ["modules"],
"patch": "modules/nf-core/hifiasm/hifiasm.diff"
},
"merquryfk/merquryfk": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
},
"minimap2/index": {
"branch": "master",
"git_sha": "72e277acfd9e61a9f1368eafb4a9e83f5bcaa9f5",
"installed_by": ["modules"]
},
"mitohifi/findmitoreference": {
"branch": "master",
"git_sha": "f52220e84bfc16a8616a5bb3d6f5bc67d601bdce",
"installed_by": ["modules"],
"patch": "modules/nf-core/mitohifi/findmitoreference/mitohifi-findmitoreference.diff"
},
"mitohifi/mitohifi": {
"branch": "master",
"git_sha": "c607e74f7aa72eb7cb7cc0a1454f97d3907e8d84",
"installed_by": ["modules"],
"patch": "modules/nf-core/mitohifi/mitohifi/mitohifi-mitohifi.diff"
},
"oatk": {
"branch": "master",
"git_sha": "d6a146325058eb9a18da2e898a2376e1d1093052",
"installed_by": ["modules"]
},
"pretextmap": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"pretextsnapshot": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"],
"patch": "modules/nf-core/pretextsnapshot/pretextsnapshot.diff"
},
"purgedups/calcuts": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"],
"patch": "modules/nf-core/purgedups/calcuts/purgedups-calcuts.diff"
},
"purgedups/getseqs": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"purgedups/pbcstat": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"purgedups/purgedups": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"purgedups/splitfa": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"samtools/collate": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "fd742419940e01ba1c5ecb172c3e32ec840662fe",
"installed_by": ["modules"]
},
"samtools/fixmate": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"samtools/markdup": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"samtools/view": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"seqtk/subseq": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"],
"patch": "modules/nf-core/seqtk/subseq/seqtk-subseq.diff"
},
"yahs": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
}
}
}
}
}
}