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FastMNNIntegration not using "sketch" assay but "RNA" assay #174

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myshu2017-03-14 opened this issue Dec 27, 2023 · 0 comments

myshu2017-03-14 commented Dec 27, 2023

Hi,
The integrated code：

library(Seurat)
library(SeuratWrappers)
combined <- IntegrateLayers(
  object = combined, method = FastMNNIntegration,
  new.reduction = "integrated.mnn",
  assay = "sketch",
  verbose = FALSE
)

But the result assay.used still "RNA" assay.

Do you have similar problems? sketched_based analysis data can not using FastMNNIntegration? Or is there any good way to solve it??

Best wishes,
Myshu

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