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Seurat v5.1.0

Test environments

  • local ubuntu 20.04 install, R 4.3.2
  • local macOS 14.1, R 4.4.0
  • win-builder (oldrelease, release, devel)

R CMD check results

There were no ERRORs or WARNINGs

There were two NOTEs

Suggests or Enhances not in mainstream repositories: BPCells, presto Availability using Additional_repositories specification: BPCells yes https://bnprks.r-universe.dev
presto yes https://satijalab.r-universe.dev

  • checking package dependencies ... NOTE Package suggested but not available for checking: 'BPCells', 'presto'

BPCells and presto are hosted on R-universe and used conditionally in Seurat.

Downstream dependencies

There are three packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality

There are 30 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SPECK, STREAK, and tidyseurat; this update does not impact their functionality

There are 22 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, grandR, harmony, RESET, rliger, SCORPIUS, SCpubr, Signac, treefit, and VAM; this update does not impact their functionality