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I figured out a code, and would to ask how to include the new cell identity in the metadata so that I can visualize DE after FindMarkers? #subsetting MIfibroblast.obj with "high" Postn gene exp #change identity of cells in PostnHigh object #subsetting MIfibroblast.obj with "low" Postn gene exp #Merging GeneHigh and Low into one obj #DEG |
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I would like to ask for your help. Is it possible to manually filter two cell subsets based on the expression of a specific gene, then do differential gene expression analysis?
For example, Can we filter cells with high gene A expression vs cells with low gene A expression, then analyze differential gene expression between these two cell subsets?
I found
subset(x = my.seurat.object, subset = my.gene >= 4)
but I can't go from here to actually having two subsets and doing gene expression analysis between the two subsets.Thank you!
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