You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi everybody, I have a problem hope any of you can give me a little help😭, thanks a lot!
When I intergrate 3 different datasets into one, the code seems ok( without error but seems to have several warning messages). However, when I tried to UMAP the integrated dataset, the figure showed the original datasets didn't integrate successfully.
I have list the codes before UMAP below, could it because the Finding all pairwise anchors is 0% or other reasons that I haven't figure out?
THANKS A LOT🙏
> anchors <- FindIntegrationAnchors(object.list = list, dims = 1:30)
Computing 2000 integration features
Scaling features for provided objects
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=05s
**Finding all pairwise anchors
| | 0 % ~calculating Running CCA**
Merging objects
Finding neighborhoods
Finding anchors
Found 34427 anchors
Filtering anchors
Retained 2093 anchors
|+++++++++++++++++ | 33% ~45m 02s Running CCA
Merging objects
Finding neighborhoods
Finding anchors
Found 32169 anchors
Filtering anchors
Retained 1319 anchors
|++++++++++++++++++++++++++++++++++ | 67% ~23m 10s Running CCA
Merging objects
Finding neighborhoods
Finding anchors
Found 90847 anchors
Filtering anchors
Retained 2631 anchors
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=03h 00m 22s
Warning message:
In CheckDuplicateCellNames(object.list = list) :
Some cell names are duplicated across objects provided. Renaming to enforce unique cell names.
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
Hi everybody, I have a problem hope any of you can give me a little help😭, thanks a lot!
When I intergrate 3 different datasets into one, the code seems ok( without error but seems to have several warning messages). However, when I tried to UMAP the integrated dataset, the figure showed the original datasets didn't integrate successfully.
I have list the codes before UMAP below, could it because the Finding all pairwise anchors is 0% or other reasons that I haven't figure out?
THANKS A LOT🙏
Beta Was this translation helpful? Give feedback.
All reactions