IntegrateData - Finding integration vector weights Error in Embeddings(reduction)[nn.cells2, dims] : subscript out of bounds

[ZhenyaoYe]

Hi,

Would there be someone available who could kindly assist me with the issue I encountered while utilizing the IntegrateData function?

Finding integration vectors
Warning in irlba(A = t(x = object), nv = npcs, ...) :
You're computing too large a percentage of total singular values, use a standard svd instead.
Warning in irlba(A = t(x = object), nv = npcs, ...) :
did not converge--results might be invalid!; try increasing work or maxit
Finding integration vector weights
Error in Embeddings(reduction)[nn.cells2, dims] : subscript out of bounds

Thank you!

Best regards,
Zhenyao

[AlonsoOga]

I'm encountering a similar issue related to vector weights

Warning in irlba(A = t(x = object), nv = npcs, ...) : did not converge--results might be invalid!; try increasing work or maxit Finding integration vector weights Error in idx[i, ] <- res[[i]][[1]] : number of items to replace is not a multiple of replacement length