Order of Normalization and splitting layer #7823
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pandaqiuqiu
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According to the Seurat 5 tutorial, there are two different approaches:
Normalize first, then split layers by sample:
obj <- NormalizeData(obj)
obj[["RNA"]] <- split(obj[["RNA"]], f = obj$Sample)
Stratify by sample first, then normalize within each sample:
obj[["RNA"]] <- split(obj[["RNA"]], f = obj$Sample)
obj <- NormalizeData(obj)
Do these two methods make a difference? Which one is better?
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