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This issue has been fixed with the new version of GenomeInfoDb |
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I was following the following Seurat tutorial:
Dictionary Learning for cross-modality integration
https://satijalab.org/seurat/articles/seurat5_integration_bridge
and when I tried
chrom_assay <- CreateChromatinAssay(...)
I got the following error:
Error in download.file(url, destfile, quiet = TRUE) :
cannot open URL 'https://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/chromInfo.txt.gz'
The current URL for this file is:
https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/chromInfo.txt.gz
Not correct: cse.ucsc.edu
correct: soe.ucsc.edu
I'd appreciate a simple worlkaround. Thanks.
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