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Dear Seurat team,
I have been trying to use the sketch-based analysis on a 149 sample study with around 1.5 million cells. I know that the sparse matrix objects in R cannot handle non-zero values larger than 2^31-1, and I thought the sketch-based framework had a way of walking around this problem. However I observed the following error when performing IntegrateLayers() function:
My guess from the error message is that the problem is still from the R sparse matrix overflow. I am curious is there a way to solve this issue by sketch-based analysis?
Thanks a lot!
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Dear Seurat team,
I have been trying to use the sketch-based analysis on a 149 sample study with around 1.5 million cells. I know that the sparse matrix objects in R cannot handle non-zero values larger than 2^31-1, and I thought the sketch-based framework had a way of walking around this problem. However I observed the following error when performing IntegrateLayers() function:
My guess from the error message is that the problem is still from the R sparse matrix overflow. I am curious is there a way to solve this issue by sketch-based analysis?
Thanks a lot!
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