Analysis with more than two groups

[hagarmorad]

Hi, I have an old analysis that I'm trying to rerun. I have four Seurat objects that I want to merge and analyze together. In the older version of Seurat, we used these commands:

wnv.list = list(soPBS,so5,so6,so7)
soWNV = RunMultiCCA(object.list=wnv.list, genes.use=genes.use, num.ccs=20)
soWNV = AlignSubspace(soWNV, reduction.type="cca", grouping.var="sample", dims.align=1:15)

What is the recommended workflow for the current version?

Thanks.