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> install.packages('Seurat')
leads to the following error:
Error: Error installing package 'SeuratObject':
========================================
* installing *source* package 'SeuratObject' ...
** package 'SeuratObject' successfully unpacked and MD5 sums checked
** using staged installation
** libs
Error in system(paste(MAKE, p1(paste("-f", shQuote(makefiles))), "compilers"), :
'make' not found
I have reinstalled RTools. Changed the path. Updated the Renv files.
make is recognized in terminal. It only seems to be the Seurat installation that is breaking. All other libraries are updating without fault.
I have attempted to also update Seurat using GitHub. > remotes::install_github("satijalab/seurat", "seurat5", quiet = TRUE)
This led to the following error:
Error: Failed to install 'Seurat' from GitHub:
Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
In addition: Warning messages:
1: In untar2(tarfile, files, list, exdir, restore_times) :
skipping pax global extended headers
2: In untar2(tarfile, files, list, exdir, restore_times) :
skipping pax global extended headers
However, > pkgbuild::check_build_tools(debug = TRUE) created the following output: Your system is ready to build packages!
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> install.packages('Seurat')
leads to the following error:
I have reinstalled RTools. Changed the path. Updated the Renv files.
make is recognized in terminal. It only seems to be the Seurat installation that is breaking. All other libraries are updating without fault.
I have attempted to also update Seurat using GitHub.
> remotes::install_github("satijalab/seurat", "seurat5", quiet = TRUE)
This led to the following error:
However,
> pkgbuild::check_build_tools(debug = TRUE)
created the following output:Your system is ready to build packages!
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