Installation Problems with the Velocyto.R Package

[keimiyako]

We are interested in considering performing a Velocity analysis in Seurat.
I am having trouble installing the package for Velocyto.R. I am trying to work through Rstudio on Windows, but the same error persists, even though I have tried everything, including changing the path and installing boost.
(I also encounter the same error on Ubuntu with WSL2. Maybe Rstudio is the problem?)

In the past, a question was raised about installing Velocyto.R, but the response there did not solve the problem.

If anyone knows how to solve this, please help.
Thank you.

devtools::install_github("velocyto-team/velocyto.R")
Downloading GitHub repo velocyto-team/velocyto.R@HEAD
Skipping 1 packages not available: pcaMethods
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file 'C:\Users\KeiMiya\AppData\Local\Temp\RtmpMfGl0K\remotes65447a706f02\velocyto-team-velocyto.R-83e6ed9/DESCRIPTION' ...
─ preparing 'velocyto.R':
✔ checking DESCRIPTION meta-information ...
─ cleaning src
Warning in .write_description(db, ldpath) :
Unknown encoding with non-ASCII data: converting to ASCII
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building 'velocyto.R_0.6.tar.gz'

Install the package in 'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3
(because 'lib' is not specified)

• installing source package 'velocyto.R' ...
  ** using staged installation
  ** libs
  using C++ compiler: 'G__1.EXE (GCC) 12.3.0'
  using C++11
  g++ -std=gnu++11 -I"C:/PROGRA1/R/R-431.2/include" -DNDEBUG -I'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3/Rcpp/include' -I'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3/RcppArmadillo/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
  g++ -std=gnu++11 -I"C:/PROGRA1/R/R-431.2/include" -DNDEBUG -I'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3/Rcpp/include' -I'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3/RcppArmadillo/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c points_within.cpp -o points_within.o
  g++ -std=gnu++11 -I"C:/PROGRA1/R/R-43~1.2/include" -DNDEBUG -I'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3/Rcpp/include' -I'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3/RcppArmadillo/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c routines.cpp -o routines.o
  routines.cpp: In function 'arma::sp_mat balanced_knn(const arma::mat&, int, int, bool, int)':
  routines.cpp:16:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  16 | for(int i=0;i<d.n_cols;i++) {
  | ~^~~~~~~~~
  routines.cpp:30:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  30 | for(int i=0;i<d.n_cols;i++) {
  | ~^~~~~~~~~
  routines.cpp:35:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  35 | for(j=0;j<dsi.n_rows && p<k;j++) {
  | ~^~~~~~~~~~~
  routines.cpp:39:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  39 | if(l[m]>= maxl) { continue; } // element has already maxed out its neighbors
  routines.cpp:43:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  43 | if(j==dsi.n_rows && p<k) {
  | ~^~~~~~~~~~~~
  routines.cpp:59:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  59 | for(int i=0;i<colptr.n_elem;i++) { colptr[i]=cc; cc+=k; }
  | ~^~~~~~~~~~~~~~
  routines.cpp: In function 'arma::mat colDeltaCor(const arma::mat&, const arma::mat&, int)':
  routines.cpp:77:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  77 | for(int i=0;i<e.n_cols;i++) {
  | ~^~~~~~~~~
  routines.cpp: In function 'arma::mat colDeltaCorSqrt(const arma::mat&, const arma::mat&, int)':
  routines.cpp:89:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  89 | for(int i=0;i<e.n_cols;i++) {
  | ^~~~~~~~~
  routines.cpp: In function 'arma::mat colDeltaCorLog10(const arma::mat&, const arma::mat&, double, int)':
  routines.cpp:102:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  102 | for(int i=0;i<e.n_cols;i++) {
  | ^~~~~~~~~
  routines.cpp: In function 'arma::mat colEuclid(const arma::mat&, const arma::mat&, int)':
  routines.cpp:118:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  118 | for(int i=0;i<e.n_cols;i++) {
  | ^~~~~~~~~
  routines.cpp: In function 'arma::mat embArrows(const arma::mat&, const arma::sp_mat&, double, int)':
  routines.cpp:147:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  147 | for(int i=0;i<emb.n_rows;i++) {
  | ^~~~~~~~~~~
  routines.cpp: In function 'arma::mat expectedExpressionShift(const arma::mat&, const arma::sp_mat&, int, double, int)':
  routines.cpp:164:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  164 | for(int i=0;i<e.n_cols;i++) {
  | ^~~~~~~~~
  routines.cpp: In function 'Rcpp::DataFrame groupMotifs(Rcpp::DataFrame, int)':
  routines.cpp:231:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  231 | for(int i=0;i<ci.size();i++) {
  | ^~~~~~~~~~
  g++ -shared -s -static-libgcc -o velocyto.R.dll tmp.def RcppExports.o points_within.o routines.o -lboost_filesystem -lboost_system -lstdc++ -LC:/PROGRA1/R/R-431.2/bin/x64 -lRlapack -LC:/PROGRA1/R/R-431.2/bin/x64 -lRblas -fopenmp -lgfortran -lm -lquadmath -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LC:/PROGRA1/R/R-431.2/bin/x64 -lR
  C:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: cannot find -lboost_filesystem: No such file or directory
  C:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: cannot find -lboost_system: No such file or directory
  collect2.exe: error: ld returned 1 exit status
  no DLL was created
  ERROR: compilation failed for package 'velocyto.R'
• removing 'C:/Users/KeiMiya/AppData/Local/R/win-library/4.3/velocyto.R'