Dask Sparse PCA #3226
Labels
Area - Out of core 💾
Working with on disk data
Area – API
API design
Area – Performance 🐌
Enhancement ✨
Milestone
What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
Please describe your wishes
@Intron7 and I set up a nice implementation using GPU here: https://github.com/scverse/rapids_singlecell/pull/179/files#diff-483d6f872ddf4abd63e32af66a8566e0dcb40ba853a8672771dcbffb0235b7f9
It should be straightforward (and easier) without GPU. Basic outline of computational-heavy steps:
It works well on GPU so hopefully we can get nice performance on GPU.
I suspect using numba-in-dask for the covariance matrix calculation (similar to @Intron7 's kernel) would be super helpful.
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