From 9649a065a9193570f80900f5d26cc07370262085 Mon Sep 17 00:00:00 2001
From: Dominik <dotto@fredhutch.org>
Date: Fri, 31 May 2024 22:55:48 -0700
Subject: [PATCH] report coverage in CI log

---
 .github/workflows/R-CMD-check.yaml | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index e4fd8f3..eb37ce5 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -75,7 +75,11 @@ jobs:
 
       - name: Test coverage
         run: |
-          covr::codecov()
+          library(covr)
+          coverage <- package_coverage()
+          print(coverage)
+          report(coverage)
+          covr::codecov(token = Sys.getenv("CODECOV_TOKEN"))
         shell: Rscript {0}
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}