testing-bcfishpass.yaml

name: testing-bcfishpass
run-name: ${{ github.actor }} Run bcfishpass on test
on:
  workflow_dispatch:
  pull_request:
    branches:
      - 'main'
env:
  DATABASE_URL: ${{ secrets.DATABASE_URL }}
jobs:
  load-csv:
    runs-on: ubuntu-latest
    environment: testing
    container: ghcr.io/smnorris/bcfishpass:main
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Run the jobs
        run:  |
          cp parameters/example_newgraph/*csv parameters/
          jobs/load_csv
  load-xings:
    runs-on: ubuntu-latest
    environment: testing
    container: ghcr.io/smnorris/bcfishpass:main
    needs: load-csv
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Run the jobs
        run:  jobs/load_modelled_stream_crossings
  prep:
    runs-on: ubuntu-latest
    environment: testing
    container: ghcr.io/smnorris/bcfishpass:main
    needs: load-xings
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Run the jobs
        run:  jobs/model_prep
  model:
    runs-on: ubuntu-latest
    environment: testing
    container: ghcr.io/smnorris/bcfishpass:main
    needs: prep
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
        with:
            fetch-tags: true
            fetch-depth: 0
      - name: Run the jobs
        run:  |
          git config --global --add safe.directory /__w/bcfishpass/bcfishpass
          jobs/model_run