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{
"version": 1,
"locale": "en_GB",
"platform": "4.3.1",
"metadata": {
"appmode": "shiny",
"primary_rmd": null,
"primary_html": null,
"content_category": "app",
"has_parameters": false
},
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"BAT": {
"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "BAT",
"Title": "Biodiversity Assessment Tools",
"Version": "2.9.3",
"Date": "2023-07-21",
"Authors@R": "c(\nperson(\"Pedro\", \"Cardoso\", email = \"[email protected]\", role = c(\"aut\", \"cre\")),\nperson(\"Stefano\", \"Mammola\", role = c(\"aut\")),\nperson(\"Francois\", \"Rigal\", role = c(\"aut\")),\nperson(\"Jose\", \"Carvalho\", role = c(\"aut\")))",
"Description": "Includes algorithms to assess alpha and beta diversity\nin all their dimensions (taxonomic, phylogenetic and functional).\nIt allows performing a number of analyses based on species\nidentities/abundances, phylogenetic/functional distances, trees,\nconvex-hulls or kernel density n-dimensional hypervolumes\ndepicting species relationships.\nCardoso et al. (2015) <doi:10.1111/2041-210X.12310>.",
"Depends": "R (>= 3.0.0)",
"Imports": "ape, geometry, graphics, hypervolume, MASS, methods, nls2,\nparallel, stats, terra, utils, vegan",
"Encoding": "UTF-8",
"License": "GPL-3",
"LazyData": "true",
"RoxygenNote": "7.2.3",
"NeedsCompilation": "no",
"Packaged": "2023-07-21 10:44:06 UTC; ungol",
"Author": "Pedro Cardoso [aut, cre],\nStefano Mammola [aut],\nFrancois Rigal [aut],\nJose Carvalho [aut]",
"Maintainer": "Pedro Cardoso <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2023-08-10 13:20:05 UTC",
"Built": "R 4.3.0; ; 2023-08-11 13:37:00 UTC; unix"
}
},
"BH": {
"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "BH",
"Type": "Package",
"Title": "Boost C++ Header Files",
"Version": "1.81.0-1",
"Date": "2023-01-17",
"Author": "Dirk Eddelbuettel, John W. Emerson and Michael J. Kane",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Description": "Boost provides free peer-reviewed portable C++ source\nlibraries. A large part of Boost is provided as C++ template code\nwhich is resolved entirely at compile-time without linking. This\npackage aims to provide the most useful subset of Boost libraries\nfor template use among CRAN packages. By placing these libraries in\nthis package, we offer a more efficient distribution system for CRAN\nas replication of this code in the sources of other packages is\navoided. As of release 1.81.0-0, the following Boost libraries are\nincluded: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast'\n'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config'\n'container' 'date_time' 'detail' 'dynamic_bitset' 'exception'\n'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap'\n'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams'\n'iterator' 'lambda2' 'math' 'move' 'mp11' 'mpl' 'multiprecision'\n'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'process'\n'propery_tree' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort'\n'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'url' 'utility'\n'uuid'.",
"License": "BSL-1.0",
"URL": "https://github.com/eddelbuettel/bh,\nhttps://dirk.eddelbuettel.com/code/bh.html",
"BugReports": "https://github.com/eddelbuettel/bh/issues",
"NeedsCompilation": "no",
"Packaged": "2023-01-17 22:52:33 UTC; edd",
"Repository": "RSPM",
"Date/Publication": "2023-01-22 08:20:02 UTC",
"Encoding": "UTF-8",
"Built": "R 4.3.0; ; 2023-04-21 22:20:51 UTC; unix"
}
},
"DBI": {
"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "DBI",
"Title": "R Database Interface",
"Version": "1.1.3",
"Date": "2022-06-18",
"Authors@R": "c(\nperson(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"),\nperson(\"Hadley\", \"Wickham\", role = \"aut\"),\nperson(\"Kirill\", \"Müller\", , \"[email protected]\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-1416-3412\")),\nperson(\"R Consortium\", role = \"fnd\")\n)",
"Description": "A database interface definition for communication between R\nand relational database management systems. All classes in this\npackage are virtual and need to be extended by the various R/DBMS\nimplementations.",
"License": "LGPL (>= 2.1)",
"URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI",
"BugReports": "https://github.com/r-dbi/DBI/issues",
"Depends": "methods, R (>= 3.0.0)",
"Suggests": "blob, covr, DBItest, dbplyr, downlit, dplyr, glue, hms,\nknitr, magrittr, RMariaDB, rmarkdown, rprojroot, RSQLite (>=\n1.1-2), testthat, xml2",
"VignetteBuilder": "knitr",
"Config/autostyle/scope": "line_breaks",
"Config/autostyle/strict": "false",
"Config/Needs/check": "r-dbi/DBItest",
"Encoding": "UTF-8",
"RoxygenNote": "7.2.0",
"Config/Needs/website": "r-dbi/DBItest, AzureKusto, bigrquery,\nDatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool,\nRAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL,\nRPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr,\nwithr",
"Collate": "'DBIObject.R' 'DBIDriver.R' 'Id.R' 'DBIConnection.R' 'ANSI.R'\n'DBI-package.R' 'DBIConnector.R' 'DBIResult.R' 'SQL.R'\n'SQLKeywords.R' 'SQLKeywords_DBIObject.R'\n'SQLKeywords_missing.R' 'data-types.R' 'data.R'\n'dbAppendTable.R' 'dbAppendTable_DBIConnection.R' 'dbBegin.R'\n'dbBind.R' 'dbCallProc.R' 'dbCanConnect.R'\n'dbCanConnect_DBIDriver.R' 'dbClearResult.R' 'dbColumnInfo.R'\n'dbCommit.R' 'dbConnect.R' 'dbConnect_DBIConnector.R'\n'dbCreateTable.R' 'dbCreateTable_DBIConnection.R'\n'dbDataType.R' 'dbDataType_DBIConnector.R'\n'dbDataType_DBIObject.R' 'dbDisconnect.R' 'dbDriver.R'\n'dbDriver_character.R' 'dbExecute.R'\n'dbExecute_DBIConnection_character.R' 'dbExistsTable.R'\n'dbExistsTable_DBIConnection_Id.R' 'dbFetch.R'\n'dbFetch_DBIResult.R' 'dbGetConnectArgs.R'\n'dbGetConnectArgs_DBIConnector.R' 'dbGetException.R'\n'dbGetInfo.R' 'dbGetInfo_DBIResult.R' 'dbGetQuery.R'\n'dbGetQuery_DBIConnection_character.R' 'dbGetRowCount.R'\n'dbGetRowsAffected.R' 'dbGetStatement.R' 'dbHasCompleted.R'\n'dbIsReadOnly.R' 'dbIsReadOnly_DBIConnector.R'\n'dbIsReadOnly_DBIObject.R' 'dbIsValid.R' 'dbListConnections.R'\n'dbListFields.R' 'dbListFields_DBIConnection_Id.R'\n'dbListFields_DBIConnection_character.R' 'dbListObjects.R'\n'dbListObjects_DBIConnection_ANY.R' 'dbListResults.R'\n'dbListTables.R' 'dbQuoteIdentifier.R'\n'dbQuoteIdentifier_DBIConnection.R' 'dbQuoteLiteral.R'\n'dbQuoteLiteral_DBIConnection.R' 'dbQuoteString.R'\n'dbQuoteString_DBIConnection.R' 'dbReadTable.R'\n'dbReadTable_DBIConnection_Id.R'\n'dbReadTable_DBIConnection_character.R' 'dbRemoveTable.R'\n'dbRemoveTable_DBIConnection_Id.R' 'dbRollback.R'\n'dbSendQuery.R' 'dbSendStatement.R'\n'dbSendStatement_DBIConnection_character.R'\n'dbSetDataMappings.R' 'dbUnloadDriver.R'\n'dbUnquoteIdentifier.R' 'dbUnquoteIdentifier_DBIConnection.R'\n'dbWithTransaction.R' 'dbWithTransaction_DBIConnection.R'\n'dbWriteTable.R' 'dbWriteTable_DBIConnection_Id_ANY.R'\n'dbiDataType.R' 'dbiDataType_AsIs.R' 'dbiDataType_Date.R'\n'dbiDataType_POSIXct.R' 'dbiDataType_character.R'\n'dbiDataType_data.frame.R' 'dbiDataType_difftime.R'\n'dbiDataType_integer.R' 'dbiDataType_list.R'\n'dbiDataType_logical.R' 'dbiDataType_numeric.R' 'deprecated.R'\n'fetch.R' 'hms.R' 'interpolate.R' 'isSQLKeyword.R'\n'isSQLKeyword_DBIObject_character.R' 'make.db.names.R'\n'make.db.names_DBIObject_character.R' 'methods_as_rd.R'\n'rownames.R' 'show_AnsiConnection.R' 'show_DBIConnection.R'\n'show_DBIConnector.R' 'show_DBIDriver.R' 'show_DBIResult.R'\n'show_Id.R' 'show_SQL.R' 'sqlAppendTable.R'\n'sqlAppendTableTemplate.R' 'sqlAppendTable_DBIConnection.R'\n'sqlCreateTable.R' 'sqlCreateTable_DBIConnection.R' 'sqlData.R'\n'sqlData_DBIConnection.R' 'sqlInterpolate.R'\n'sqlInterpolate_DBIConnection.R' 'sqlParseVariables.R'\n'sqlParseVariables_DBIConnection.R' 'summary.R'\n'summary_DBIObject.R' 'transactions.R'",
"NeedsCompilation": "no",
"Packaged": "2022-06-18 01:24:38 UTC; kirill",
"Author": "R Special Interest Group on Databases (R-SIG-DB) [aut],\nHadley Wickham [aut],\nKirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),\nR Consortium [fnd]",
"Maintainer": "Kirill Müller <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2022-06-18 07:10:15 UTC",
"Built": "R 4.3.0; ; 2023-04-21 21:46:30 UTC; unix"
}
},
"DT": {
"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "DT",
"Type": "Package",
"Title": "A Wrapper of the JavaScript Library 'DataTables'",
"Version": "0.30",
"Authors@R": "c(\nperson(\"Yihui\", \"Xie\", email = \"[email protected]\", role = c(\"aut\", \"cre\")),\nperson(\"Joe\", \"Cheng\", role = \"aut\"),\nperson(\"Xianying\", \"Tan\", role = \"aut\"),\nperson(\"JJ\", \"Allaire\", role = \"ctb\"),\nperson(\"Maximilian\", \"Girlich\", role = \"ctb\"),\nperson(\"Greg\", \"Freedman Ellis\", role = \"ctb\"),\nperson(\"Johannes\", \"Rauh\", role = \"ctb\"),\nperson(\"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables in htmlwidgets/lib\"),\nperson(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js in htmlwidgets/lib\"),\nperson(\"Leon\", \"Gersen\", role = c(\"ctb\", \"cph\"), comment = \"noUiSlider in htmlwidgets/lib\"),\nperson(\"Bartek\", \"Szopka\", role = c(\"ctb\", \"cph\"), comment = \"jquery.highlight.js in htmlwidgets/lib\"),\nperson(\"Alex\", \"Pickering\", role = c(\"ctb\")),\nperson(\"William\", \"Holmes\", role = c(\"ctb\")),\nperson(\"Mikko\", \"Marttila\", role = c(\"ctb\")),\nperson(\"Andres\", \"Quintero\", role = c(\"ctb\")),\nperson(\"Stéphane\", \"Laurent\", role = c(\"ctb\")),\nperson(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n)",
"Maintainer": "Yihui Xie <[email protected]>",
"Description": "Data objects in R can be rendered as HTML tables using the\nJavaScript library 'DataTables' (typically via R Markdown or Shiny). The\n'DataTables' library has been included in this R package. The package name\n'DT' is an abbreviation of 'DataTables'.",
"URL": "https://github.com/rstudio/DT",
"BugReports": "https://github.com/rstudio/DT/issues",
"License": "GPL-3 | file LICENSE",
"Imports": "htmltools (>= 0.3.6), htmlwidgets (>= 1.3), httpuv, jsonlite\n(>= 0.9.16), magrittr, crosstalk, jquerylib, promises",
"Suggests": "knitr (>= 1.8), rmarkdown, shiny (>= 1.6), bslib, future,\ntestit, tibble",
"VignetteBuilder": "knitr",
"RoxygenNote": "7.2.3",
"Encoding": "UTF-8",
"NeedsCompilation": "no",
"Packaged": "2023-10-04 20:26:15 UTC; yihui",
"Author": "Yihui Xie [aut, cre],\nJoe Cheng [aut],\nXianying Tan [aut],\nJJ Allaire [ctb],\nMaximilian Girlich [ctb],\nGreg Freedman Ellis [ctb],\nJohannes Rauh [ctb],\nSpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib),\nBrian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib),\nLeon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib),\nBartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib),\nAlex Pickering [ctb],\nWilliam Holmes [ctb],\nMikko Marttila [ctb],\nAndres Quintero [ctb],\nStéphane Laurent [ctb],\nPosit Software, PBC [cph, fnd]",
"Repository": "RSPM",
"Date/Publication": "2023-10-05 13:10:02 UTC",
"Built": "R 4.3.0; ; 2023-10-06 11:07:28 UTC; unix"
}
},
"FNN": {
"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "FNN",
"Version": "1.1.3.2",
"Date": "2019-02-15",
"Title": "Fast Nearest Neighbor Search Algorithms and Applications",
"Author": "Alina Beygelzimer, Sham Kakadet and John Langford (cover tree library),\nSunil Arya and David Mount (ANN library 1.1.2 for the kd-tree approach), Shengqiao Li",
"Copyright": "ANN Copyright (c) 1997-2010 University of Maryland and Sunil\nArya and David Mount. All Rights Reserved.",
"Maintainer": "Shengqiao Li <[email protected]>",
"Depends": "R (>= 3.0.0)",
"Suggests": "chemometrics, mvtnorm",
"Description": "Cover-tree and kd-tree fast k-nearest neighbor search algorithms and related applications\nincluding KNN classification, regression and information measures are implemented.",
"License": "GPL (>= 2)",
"NeedsCompilation": "yes",
"Packaged": "2023-03-20 11:46:05 UTC; hornik",
"Repository": "RSPM",
"Date/Publication": "2023-03-20 14:01:18 UTC",
"Encoding": "UTF-8",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-07-10 03:30:13 UTC; unix"
}
},
"KernSmooth": {
"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "KernSmooth",
"Priority": "recommended",
"Version": "2.23-22",
"Date": "2023-07-10",
"Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)",
"Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\",\nemail = \"[email protected]\"),\nperson(\"Cleve\", \"Moler\", role = \"ctb\",\ncomment = \"LINPACK routines in src/d*\"),\nperson(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"),\nemail = \"[email protected]\",\ncomment = \"R port and updates\"))",
"Note": "Maintainers are not available to give advice on using a package\nthey did not author.",
"Depends": "R (>= 2.5.0), stats",
"Suggests": "MASS, carData",
"Description": "Functions for kernel smoothing (and density estimation)\ncorresponding to the book:\nWand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".",
"License": "Unlimited",
"ByteCompile": "yes",
"NeedsCompilation": "yes",
"Packaged": "2023-07-10 11:00:31 UTC; ripley",
"Author": "Matt Wand [aut],\nCleve Moler [ctb] (LINPACK routines in src/d*),\nBrian Ripley [trl, cre, ctb] (R port and updates)",
"Maintainer": "Brian Ripley <[email protected]>",
"Repository": "CRAN",
"Date/Publication": "2023-07-10 14:38:27 UTC",
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"Repository": "https://packagemanager.rstudio.com/all/latest",
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"Priority": "recommended",
"Version": "7.3-60",
"Date": "2023-05-02",
"Revision": "$Rev: 3621 $",
"Depends": "R (>= 4.0), grDevices, graphics, stats, utils",
"Imports": "methods",
"Suggests": "lattice, nlme, nnet, survival",
"Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"),\nemail = \"[email protected]\"),\nperson(\"Bill\", \"Venables\", role = \"ctb\"),\nperson(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"),\nperson(\"Kurt\", \"Hornik\", role = \"trl\",\ncomment = \"partial port ca 1998\"),\nperson(\"Albrecht\", \"Gebhardt\", role = \"trl\",\ncomment = \"partial port ca 1998\"),\nperson(\"David\", \"Firth\", role = \"ctb\"))",
"Description": "Functions and datasets to support Venables and Ripley,\n\"Modern Applied Statistics with S\" (4th edition, 2002).",
"Title": "Support Functions and Datasets for Venables and Ripley's MASS",
"LazyData": "yes",
"ByteCompile": "yes",
"License": "GPL-2 | GPL-3",
"URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
"Contact": "<[email protected]>",
"NeedsCompilation": "yes",
"Packaged": "2023-05-02 16:42:41 UTC; ripley",
"Author": "Brian Ripley [aut, cre, cph],\nBill Venables [ctb],\nDouglas M. Bates [ctb],\nKurt Hornik [trl] (partial port ca 1998),\nAlbrecht Gebhardt [trl] (partial port ca 1998),\nDavid Firth [ctb]",
"Maintainer": "Brian Ripley <[email protected]>",
"Repository": "CRAN",
"Date/Publication": "2023-05-04 07:32:21 UTC",
"Built": "R 4.3.1; x86_64-pc-linux-gnu; 'Thu, 29 Jun 2023 02:14:15 +0000'; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "Matrix",
"Version": "1.6-0",
"Date": "2023-06-30",
"Priority": "recommended",
"Title": "Sparse and Dense Matrix Classes and Methods",
"Description": "A rich hierarchy of sparse and dense matrix classes,\nincluding general, triangular, symmetric, and diagonal matrices\nwith numeric, logical, or pattern entries. Efficient methods for\noperating on such matrices, often wrapping the 'BLAS', 'LAPACK',\nand 'SuiteSparse' libraries.",
"License": "GPL (>= 2) | file LICENCE",
"URL": "https://Matrix.R-forge.R-project.org",
"BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
"Contact": "[email protected]",
"Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-8316-9503\")),\nperson(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"),\nemail = \"[email protected]\",\ncomment = c(ORCID = \"0000-0002-8685-9910\")),\nperson(\"Mikael\", \"Jagan\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3542-2938\")),\nperson(\"Timothy A.\", \"Davis\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7614-6899\",\n\"SuiteSparse libraries, notably CHOLMOD and AMD\",\n\"collaborators listed in dir(pattern=\\\"^[A-Z]+[.]txt$\\\", full.names=TRUE, system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"))\")),\nperson(\"Jens\", \"Oehlschlägel\", role = \"ctb\",\ncomment = \"initial nearPD()\"),\nperson(\"Jason\", \"Riedy\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4345-4200\",\n\"GNU Octave's condest() and onenormest()\",\n\"Copyright: Regents of the University of California\")),\nperson(\"R Core Team\", role = \"ctb\",\ncomment = \"base R's matrix implementation\"))",
"Depends": "R (>= 3.5.0), methods",
"Imports": "grDevices, graphics, grid, lattice, stats, utils",
"Suggests": "MASS, datasets, sfsmisc",
"Enhances": "SparseM, graph",
"LazyData": "no",
"LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
"BuildResaveData": "no",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Packaged": "2023-07-03 13:28:32 UTC; maechler",
"Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>),\nMartin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),\nMikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>),\nTimothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>,\nSuiteSparse libraries, notably CHOLMOD and AMD, collaborators\nlisted in dir(pattern=\"^[A-Z]+[.]txt$\", full.names=TRUE,\nsystem.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"))),\nJens Oehlschlägel [ctb] (initial nearPD()),\nJason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU\nOctave's condest() and onenormest(), Copyright: Regents of the\nUniversity of California),\nR Core Team [ctb] (base R's matrix implementation)",
"Maintainer": "Martin Maechler <[email protected]>",
"Repository": "CRAN",
"Date/Publication": "2023-07-08 11:00:09 UTC",
"Built": "R 4.3.1; x86_64-pc-linux-gnu; 'Thu, 20 Jul 2023 20:10:24 +0000'; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
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"Title": "Rapid Calculation of Model Metrics",
"Version": "1.2.2.2",
"Date": "2018-11-03",
"Authors@R": "person(\"Tyler\", \"Hunt\", email = \"[email protected]\", role = c(\"aut\", \"cre\"))",
"Description": "Collection of metrics for evaluating models written in C++ using 'Rcpp'. Popular metrics include area under the curve, log loss, root mean square error, etc.",
"Depends": "R (>= 3.2.2)",
"License": "GPL (>= 2)",
"Encoding": "UTF-8",
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"RoxygenNote": "6.0.1",
"Suggests": "testthat",
"NeedsCompilation": "yes",
"Packaged": "2020-03-17 06:58:01 UTC; ripley",
"Author": "Tyler Hunt [aut, cre]",
"Maintainer": "Tyler Hunt <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2020-03-17 07:45:31 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-07-10 02:21:29 UTC; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
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"Description": "Creates classes with reference semantics, similar to R's built-in\nreference classes. Compared to reference classes, R6 classes are simpler\nand lighter-weight, and they are not built on S4 classes so they do not\nrequire the methods package. These classes allow public and private\nmembers, and they support inheritance, even when the classes are defined in\ndifferent packages.",
"Depends": "R (>= 3.0)",
"Suggests": "testthat, pryr",
"License": "MIT + file LICENSE",
"URL": "https://r6.r-lib.org, https://github.com/r-lib/R6/",
"BugReports": "https://github.com/r-lib/R6/issues",
"RoxygenNote": "7.1.1",
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"Packaged": "2021-08-06 20:18:46 UTC; winston",
"Author": "Winston Chang [aut, cre]",
"Maintainer": "Winston Chang <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2021-08-19 14:00:05 UTC",
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"Date": "2022-04-03",
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"Authors@R": "c(person(given = \"Erich\", family = \"Neuwirth\", role = c(\"aut\",\n\"cre\"), email = \"[email protected]\"))",
"Author": "Erich Neuwirth [aut, cre]",
"Maintainer": "Erich Neuwirth <[email protected]>",
"Depends": "R (>= 2.0.0)",
"Description": "Provides color schemes for maps (and other graphics)\ndesigned by Cynthia Brewer as described at http://colorbrewer2.org.",
"License": "Apache License 2.0",
"Packaged": "2022-04-03 10:26:20 UTC; neuwirth",
"NeedsCompilation": "no",
"Repository": "RSPM",
"Date/Publication": "2022-04-03 19:20:13 UTC",
"Encoding": "UTF-8",
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"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "Rcpp",
"Title": "Seamless R and C++ Integration",
"Version": "1.0.11",
"Date": "2023-07-03",
"Author": "Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,\nNathan Russell, Inaki Ucar, Douglas Bates and John Chambers",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Description": "The 'Rcpp' package provides R functions as well as C++ classes which\noffer a seamless integration of R and C++. Many R data types and objects can be\nmapped back and forth to C++ equivalents which facilitates both writing of new\ncode as well as easier integration of third-party libraries. Documentation\nabout 'Rcpp' is provided by several vignettes included in this package, via the\n'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and\nFrancois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,\n<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,\n<doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
"Imports": "methods, utils",
"Suggests": "tinytest, inline, rbenchmark, pkgKitten (>= 0.1.2)",
"URL": "https://www.rcpp.org,\nhttps://dirk.eddelbuettel.com/code/rcpp.html,\nhttps://github.com/RcppCore/Rcpp",
"License": "GPL (>= 2)",
"BugReports": "https://github.com/RcppCore/Rcpp/issues",
"MailingList": "[email protected]",
"RoxygenNote": "6.1.1",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Packaged": "2023-07-03 15:56:55 UTC; edd",
"Repository": "RSPM",
"Date/Publication": "2023-07-06 07:33:14 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-07-10 02:13:44 UTC; unix"
}
},
"RcppArmadillo": {
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "RcppArmadillo",
"Type": "Package",
"Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra\nLibrary",
"Version": "0.12.6.4.0",
"Date": "2024-09-06",
"Author": "Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Description": "'Armadillo' is a templated C++ linear algebra library (by Conrad\nSanderson) that aims towards a good balance between speed and ease of\nuse. Integer, floating point and complex numbers are supported, as\nwell as a subset of trigonometric and statistics functions. Various\nmatrix decompositions are provided through optional integration with\nLAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the\nheader files from the templated 'Armadillo' library. Thus users do\nnot need to install 'Armadillo' itself in order to use\n'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed\nunder Apache License 2; previous releases were under licensed as MPL\n2.0 from version 3.800.0 onwards and LGPL-3 prior to that;\n'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed\nunder the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
"License": "GPL (>= 2)",
"LazyLoad": "yes",
"Depends": "R (>= 3.3.0)",
"LinkingTo": "Rcpp",
"Imports": "Rcpp (>= 0.11.0), stats, utils, methods",
"Suggests": "tinytest, Matrix (>= 1.3.0), pkgKitten, reticulate, slam",
"URL": "https://github.com/RcppCore/RcppArmadillo,\nhttps://dirk.eddelbuettel.com/code/rcpp.armadillo.html",
"BugReports": "https://github.com/RcppCore/RcppArmadillo/issues",
"NeedsCompilation": "yes",
"Packaged": "2023-09-07 23:47:58 UTC; edd",
"Repository": "RSPM",
"Date/Publication": "2023-09-10 09:00:02 UTC",
"Encoding": "UTF-8",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-09-12 02:39:35 UTC; unix"
}
},
"RcppProgress": {
"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "RcppProgress",
"Maintainer": "Karl Forner <[email protected]>",
"License": "GPL (>= 3)",
"Title": "An Interruptible Progress Bar with OpenMP Support for C++ in R\nPackages",
"Type": "Package",
"LazyLoad": "yes",
"Author": "Karl Forner <[email protected]>",
"Description": "Allows to display a progress bar in the R\nconsole for long running computations taking place in c++ code,\nand support for interrupting those computations even in multithreaded\ncode, typically using OpenMP.",
"URL": "https://github.com/kforner/rcpp_progress",
"BugReports": "https://github.com/kforner/rcpp_progress/issues",
"Version": "0.4.2",
"Date": "2020-02-06",
"Suggests": "RcppArmadillo, devtools, roxygen2, testthat",
"RoxygenNote": "6.1.1",
"Encoding": "UTF-8",
"NeedsCompilation": "no",
"Packaged": "2020-02-06 10:57:24 UTC; karl",
"Repository": "RSPM",
"Date/Publication": "2020-02-06 12:10:08 UTC",
"Built": "R 4.3.0; ; 2023-05-30 12:29:34 UTC; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "SQUAREM",
"Version": "2021.1",
"Date": "2021-01-12",
"Title": "Squared Extrapolation Methods for Accelerating EM-Like Monotone\nAlgorithms",
"Description": "Algorithms for accelerating the convergence of slow,\nmonotone sequences from smooth, contraction mapping such as the\nEM algorithm. It can be used to accelerate any smooth, linearly\nconvergent acceleration scheme. A tutorial style introduction\nto this package is available in a vignette on the CRAN download\npage or, when the package is loaded in an R session, with\nvignette(\"SQUAREM\"). Refer to the J Stat Software article: <doi:10.18637/jss.v092.i07>.",
"Depends": "R (>= 3.0)",
"Suggests": "setRNG",
"LazyLoad": "yes",
"License": "GPL (>= 2)",
"Author": "Ravi Varadhan",
"Maintainer": "Ravi Varadhan <[email protected]>",
"URL": "https://coah.jhu.edu/people/Faculty_personal_Pages/Varadhan.html",
"Repository": "RSPM",
"NeedsCompilation": "no",
"Packaged": "2021-01-12 23:59:02 UTC; rvaradhan",
"Date/Publication": "2021-01-13 06:40:10 UTC",
"Encoding": "UTF-8",
"Built": "R 4.3.0; ; 2023-04-21 22:24:52 UTC; unix"
}
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "abind",
"Version": "1.4-5",
"Date": "2016-06-19",
"Title": "Combine Multidimensional Arrays",
"Author": "Tony Plate <[email protected]> and Richard Heiberger",
"Maintainer": "Tony Plate <[email protected]>",
"Description": "Combine multidimensional arrays into a single array.\nThis is a generalization of 'cbind' and 'rbind'. Works with\nvectors, matrices, and higher-dimensional arrays. Also\nprovides functions 'adrop', 'asub', and 'afill' for manipulating,\nextracting and replacing data in arrays.",
"Depends": "R (>= 1.5.0)",
"Imports": "methods, utils",
"License": "LGPL (>= 2)",
"NeedsCompilation": "no",
"Packaged": "2016-07-19 15:24:25 UTC; tap",
"Repository": "RSPM",
"Date/Publication": "2016-07-21 19:18:05",
"Encoding": "UTF-8",
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
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"Type": "Package",
"Title": "Anything to 'POSIXct' or 'Date' Converter",
"Version": "0.3.9",
"Date": "2020-08-26",
"Author": "Dirk Eddelbuettel",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Description": "Convert input in any one of character, integer, numeric, factor,\nor ordered type into 'POSIXct' (or 'Date') objects, using one of a number of\npredefined formats, and relying on Boost facilities for date and time parsing.",
"URL": "http://dirk.eddelbuettel.com/code/anytime.html",
"BugReports": "https://github.com/eddelbuettel/anytime/issues",
"License": "GPL (>= 2)",
"Encoding": "UTF-8",
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"Imports": "Rcpp (>= 0.12.9)",
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"Packaged": "2020-08-26 17:46:45.898451 UTC; edd",
"Repository": "RSPM",
"Date/Publication": "2020-08-27 11:40:21 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-04-22 00:00:04 UTC; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "ape",
"Version": "5.7-1",
"Date": "2023-03-13",
"Title": "Analyses of Phylogenetics and Evolution",
"Authors@R": "c(person(\"Emmanuel\", \"Paradis\", role = c(\"aut\", \"cre\", \"cph\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0003-3092-2199\")),\nperson(\"Simon\", \"Blomberg\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-1062-0839\")),\nperson(\"Ben\", \"Bolker\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-2127-0443\")),\nperson(\"Joseph\", \"Brown\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-3835-8062\")),\nperson(\"Santiago\", \"Claramunt\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-8926-5974\")),\nperson(\"Julien\", \"Claude\", role = c(\"aut\", \"cph\"), , comment = c(ORCID = \"0000-0002-9267-1228\")),\nperson(\"Hoa Sien\", \"Cuong\", role = c(\"aut\", \"cph\")),\nperson(\"Richard\", \"Desper\", role = c(\"aut\", \"cph\")),\nperson(\"Gilles\", \"Didier\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-0596-9112\")),\nperson(\"Benoit\", \"Durand\", role = c(\"aut\", \"cph\")),\nperson(\"Julien\", \"Dutheil\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-7753-4121\")),\nperson(\"RJ\", \"Ewing\", role = c(\"aut\", \"cph\")),\nperson(\"Olivier\", \"Gascuel\", role = c(\"aut\", \"cph\")),\nperson(\"Thomas\", \"Guillerme\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-4325-1275\")),\nperson(\"Christoph\", \"Heibl\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-7655-3299\")),\nperson(\"Anthony\", \"Ives\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-9375-9523\")),\nperson(\"Bradley\", \"Jones\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-4498-1069\")),\nperson(\"Franz\", \"Krah\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-7866-7508\")),\nperson(\"Daniel\", \"Lawson\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-5311-6213\")),\nperson(\"Vincent\", \"Lefort\", role = c(\"aut\", \"cph\")),\nperson(\"Pierre\", \"Legendre\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-3838-3305\")),\nperson(\"Jim\", \"Lemon\", role = c(\"aut\", \"cph\")),\nperson(\"Guillaume\", \"Louvel\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-7745-0785\")),\nperson(\"Eric\", \"Marcon\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-5249-321X\")),\nperson(\"Rosemary\", \"McCloskey\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-9772-8553\")),\nperson(\"Johan\", \"Nylander\", role = c(\"aut\", \"cph\")),\nperson(\"Rainer\", \"Opgen-Rhein\", role = c(\"aut\", \"cph\")),\nperson(\"Andrei-Alin\", \"Popescu\", role = c(\"aut\", \"cph\")),\nperson(\"Manuela\", \"Royer-Carenzi\", role = c(\"aut\", \"cph\")),\nperson(\"Klaus\", \"Schliep\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-2941-0161\")),\nperson(\"Korbinian\", \"Strimmer\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-7917-2056\")),\nperson(\"Damien\", \"de Vienne\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-9532-5251\")))",
"Depends": "R (>= 3.2.0)",
"Suggests": "gee, expm, igraph, phangorn",
"Imports": "nlme, lattice, graphics, methods, stats, utils, parallel, Rcpp\n(>= 0.12.0), digest",
"LinkingTo": "Rcpp",
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"Description": "Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.",
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"NeedsCompilation": "yes",
"Description": "Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.",
"License": "GPL (>= 2)",
"URL": "https://r-spatial.github.io/classInt/,\nhttps://github.com/r-spatial/classInt/",
"BugReports": "https://github.com/r-spatial/classInt/issues/",
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"Packaged": "2023-09-05 08:36:55 UTC; rsb",
"Author": "Roger Bivand [aut, cre] (<https://orcid.org/0000-0003-2392-6140>),\nBill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),\nRichard Dunlap [ctb],\nDiego Hernangómez [ctb] (<https://orcid.org/0000-0001-8457-4658>),\nHisaji Ono [ctb],\nJosiah Parry [ctb] (<https://orcid.org/0000-0001-9910-865X>),\nMatthieu Stigler [ctb] (<https://orcid.org/0000-0002-6802-4290>)",
"Maintainer": "Roger Bivand <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2023-09-05 13:00:06 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-09-06 11:25:06 UTC; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
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"Title": "Helpers for Developing Command Line Interfaces",
"Version": "3.6.1",
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"Description": "A suite of tools to build attractive command line interfaces\n('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,\netc. Supports custom themes via a 'CSS'-like language. It also\ncontains a number of lower level 'CLI' elements: rules, boxes, trees,\nand 'Unicode' symbols with 'ASCII' alternatives. It support ANSI\ncolors and text styles as well.",
"License": "MIT + file LICENSE",
"URL": "https://cli.r-lib.org, https://github.com/r-lib/cli#readme",
"BugReports": "https://github.com/r-lib/cli/issues",
"Depends": "R (>= 3.4)",
"Imports": "utils",
"Suggests": "callr, covr, crayon, digest, glue (>= 1.6.0), grDevices,\nhtmltools, htmlwidgets, knitr, methods, mockery, processx, ps\n(>= 1.3.4.9000), rlang (>= 1.0.2.9003), rmarkdown, rprojroot,\nrstudioapi, testthat, tibble, whoami, withr",
"Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc,\nfansi, prettyunits, sessioninfo, tidyverse/tidytemplate,\nusethis, vctrs",
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"Author": "Gábor Csárdi [aut, cre],\nHadley Wickham [ctb],\nKirill Müller [ctb],\nRStudio [cph, fnd]",
"Maintainer": "Gábor Csárdi <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2023-03-23 12:52:05 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-04-21 21:44:50 UTC; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
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"Title": "Read and Write from the System Clipboard",
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"Authors@R": "c(\nperson(\"Matthew\", \"Lincoln\", , \"[email protected]\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4387-3384\")),\nperson(\"Louis\", \"Maddox\", role = \"ctb\"),\nperson(\"Steve\", \"Simpson\", role = \"ctb\"),\nperson(\"Jennifer\", \"Bryan\", role = \"ctb\")\n)",
"Description": "Simple utility functions to read from and write to\nthe Windows, OS X, and X11 clipboards.",
"License": "GPL-3",
"URL": "https://github.com/mdlincoln/clipr,\nhttp://matthewlincoln.net/clipr/",
"BugReports": "https://github.com/mdlincoln/clipr/issues",
"Imports": "utils",
"Suggests": "covr, knitr, rmarkdown, rstudioapi (>= 0.5), testthat (>=\n2.0.0)",
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"NeedsCompilation": "no",
"Packaged": "2022-02-19 02:20:21 UTC; mlincoln",
"Author": "Matthew Lincoln [aut, cre] (<https://orcid.org/0000-0002-4387-3384>),\nLouis Maddox [ctb],\nSteve Simpson [ctb],\nJennifer Bryan [ctb]",
"Maintainer": "Matthew Lincoln <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2022-02-22 00:58:45 UTC",
"Built": "R 4.3.0; ; 2023-04-21 21:44:55 UTC; unix"
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
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"Title": "Date-Time Types and Tools",
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"Description": "Provides a comprehensive library for date-time manipulations\nusing a new family of orthogonal date-time classes (durations, time\npoints, zoned-times, and calendars) that partition responsibilities so\nthat the complexities of time zones are only considered when they are\nreally needed. Capabilities include: date-time parsing, formatting,\narithmetic, extraction and updating of components, and rounding.",
"License": "MIT + file LICENSE",
"URL": "https://clock.r-lib.org, https://github.com/r-lib/clock",
"BugReports": "https://github.com/r-lib/clock/issues",
"Depends": "R (>= 3.5.0)",
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"Packaged": "2023-05-15 17:58:13 UTC; davis",
"Author": "Davis Vaughan [aut, cre],\nPosit Software, PBC [cph, fnd]",
"Maintainer": "Davis Vaughan <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2023-05-15 19:10:05 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-07-21 11:14:28 UTC; unix"
}
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "cluster",
"Version": "2.1.4",
"Date": "2022-08-19",
"Priority": "recommended",
"Title": "\"Finding Groups in Data\": Cluster Analysis Extended Rousseeuw et\nal.",
"Description": "Methods for Cluster analysis. Much extended the original from\nPeter Rousseeuw, Anja Struyf and Mia Hubert,\nbased on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".",
"Maintainer": "Martin Maechler <[email protected]>",
"Authors@R": "c(person(\"Martin\",\"Maechler\", role = c(\"aut\",\"cre\"),\nemail=\"[email protected]\", comment = c(ORCID = \"0000-0002-8685-9910\"))\n,person(\"Peter\", \"Rousseeuw\", role=\"aut\", email=\"[email protected]\",\ncomment = c(\"Fortran original\", ORCID = \"0000-0002-3807-5353\"))\n,person(\"Anja\", \"Struyf\", role=\"aut\", comment= \"S original\")\n,person(\"Mia\", \"Hubert\", role=\"aut\", email= \"[email protected]\",\ncomment = c(\"S original\", ORCID = \"0000-0001-6398-4850\"))\n,person(\"Kurt\", \"Hornik\", role=c(\"trl\", \"ctb\"),\nemail=\"[email protected]\",\ncomment=c(\"port to R; maintenance(1999-2000)\", ORCID=\"0000-0003-4198-9911\"))\n,person(\"Matthias\", \"Studer\", role=\"ctb\")\n,person(\"Pierre\", \"Roudier\", role=\"ctb\")\n,person(\"Juan\", \"Gonzalez\", role=\"ctb\")\n,person(\"Kamil\", \"Kozlowski\", role=\"ctb\")\n,person(\"Erich\", \"Schubert\", role=\"ctb\", comment = c(\"fastpam options for pam()\",\nORCID = \"0000-0001-9143-4880\"))\n,person(\"Keefe\", \"Murphy\", role=\"ctb\", comment = \"volume.ellipsoid({d >= 3})\")\n)",
"Depends": "R (>= 3.5.0)",
"Imports": "graphics, grDevices, stats, utils",
"Suggests": "MASS, Matrix",
"SuggestsNote": "MASS: two examples using cov.rob() and mvrnorm(); Matrix\ntools for testing",
"LazyLoad": "yes",
"LazyData": "yes",
"ByteCompile": "yes",
"BuildResaveData": "no",
"License": "GPL (>= 2)",
"URL": "https://svn.r-project.org/R-packages/trunk/cluster/",
"NeedsCompilation": "yes",
"Packaged": "2022-08-19 13:31:31 UTC; maechler",
"Author": "Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),\nPeter Rousseeuw [aut] (Fortran original,\n<https://orcid.org/0000-0002-3807-5353>),\nAnja Struyf [aut] (S original),\nMia Hubert [aut] (S original, <https://orcid.org/0000-0001-6398-4850>),\nKurt Hornik [trl, ctb] (port to R; maintenance(1999-2000),\n<https://orcid.org/0000-0003-4198-9911>),\nMatthias Studer [ctb],\nPierre Roudier [ctb],\nJuan Gonzalez [ctb],\nKamil Kozlowski [ctb],\nErich Schubert [ctb] (fastpam options for pam(),\n<https://orcid.org/0000-0001-9143-4880>),\nKeefe Murphy [ctb] (volume.ellipsoid({d >= 3}))",
"Repository": "CRAN",
"Date/Publication": "2022-08-22 10:10:02 UTC",
"Built": "R 4.2.1; x86_64-pc-linux-gnu; 'Wed, 24 Aug 2022 01:28:00 +0000'; unix"
}
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"description": {
"Package": "codetools",
"Version": "0.2-19",
"Priority": "recommended",
"Author": "Luke Tierney <[email protected]>",
"Description": "Code analysis tools for R.",
"Title": "Code Analysis Tools for R",
"Depends": "R (>= 2.1)",
"Maintainer": "Luke Tierney <[email protected]>",
"URL": "https://gitlab.com/luke-tierney/codetools",
"License": "GPL",
"NeedsCompilation": "no",
"Packaged": "2023-01-31 19:16:51 UTC; luke",
"Repository": "CRAN",
"Date/Publication": "2023-02-01 13:21:59 UTC",
"Built": "R 4.2.2; ; 'Sat, 04 Feb 2023 14:51:19 +0000'; unix"
}
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"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "colorspace",
"Version": "2.1-0",
"Date": "2023-01-23",
"Title": "A Toolbox for Manipulating and Assessing Colors and Palettes",
"Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"[email protected]\"),\nperson(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"[email protected]\",\ncomment = c(ORCID = \"0000-0002-3224-8858\")),\nperson(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"[email protected]\",\ncomment = c(ORCID = \"0000-0003-4198-9911\")),\nperson(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"[email protected]\",\ncomment = c(ORCID = \"0000-0001-9032-8912\")),\nperson(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"[email protected]\",\ncomment = c(ORCID = \"0000-0002-3798-5507\")),\nperson(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"[email protected]\",\ncomment = c(ORCID = \"0000-0002-7470-9261\")),\nperson(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"[email protected]\",\ncomment = c(ORCID = \"0000-0001-7346-3047\")),\nperson(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"[email protected]\",\ncomment = c(ORCID = \"0000-0003-0918-3766\")))",
"Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS,\nCIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB.\nQualitative, sequential, and diverging color palettes based on HCL colors\nare provided along with corresponding ggplot2 color scales.\nColor palette choice is aided by an interactive app (with either a Tcl/Tk\nor a shiny graphical user interface) and shiny apps with an HCL color picker and a\ncolor vision deficiency emulator. Plotting functions for displaying\nand assessing palettes include color swatches, visualizations of the\nHCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation\nfunctions include: desaturation, lightening/darkening, mixing, and\nsimulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly).\nDetails can be found on the project web page at <https://colorspace.R-Forge.R-project.org/>\nand in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical\nSoftware, <doi:10.18637/jss.v096.i01>).",
"Depends": "R (>= 3.0.0), methods",
"Imports": "graphics, grDevices, stats",
"Suggests": "datasets, utils, KernSmooth, MASS, kernlab, mvtnorm, vcd,\ntcltk, shiny, shinyjs, ggplot2, dplyr, scales, grid, png, jpeg,\nknitr, rmarkdown, RColorBrewer, rcartocolor, scico, viridis,\nwesanderson",
"VignetteBuilder": "knitr",
"License": "BSD_3_clause + file LICENSE",
"URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/",
"BugReports": "https://colorspace.R-Forge.R-project.org/contact.html",
"LazyData": "yes",
"Encoding": "UTF-8",
"RoxygenNote": "7.2.3",
"NeedsCompilation": "yes",
"Packaged": "2023-01-23 08:50:11 UTC; zeileis",
"Author": "Ross Ihaka [aut],\nPaul Murrell [aut] (<https://orcid.org/0000-0002-3224-8858>),\nKurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),\nJason C. Fisher [aut] (<https://orcid.org/0000-0001-9032-8912>),\nReto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>),\nClaus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>),\nClaire D. McWhite [aut] (<https://orcid.org/0000-0001-7346-3047>),\nAchim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>)",
"Maintainer": "Achim Zeileis <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2023-01-23 11:40:02 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-04-21 21:54:01 UTC; unix"
}
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"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "commonmark",
"Type": "Package",
"Title": "High Performance CommonMark and Github Markdown Rendering in R",
"Version": "1.9.0",
"Authors@R": "c(\nperson(\"Jeroen\", \"Ooms\", ,\"[email protected]\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4035-0289\")),\nperson(\"John MacFarlane\", role = \"cph\", comment = \"Author of cmark\"))",
"URL": "https://docs.ropensci.org/commonmark/\nhttps://r-lib.r-universe.dev/commonmark\nhttps://github.github.com/gfm/ (spec)",
"BugReports": "https://github.com/r-lib/commonmark/issues",
"Description": "The CommonMark specification defines a rationalized version of markdown\nsyntax. This package uses the 'cmark' reference implementation for converting\nmarkdown text into various formats including html, latex and groff man. In\naddition it exposes the markdown parse tree in xml format. Also includes opt-in\nsupport for GFM extensions including tables, autolinks, and strikethrough text.",
"License": "BSD_2_clause + file LICENSE",
"Suggests": "curl, testthat, xml2",
"RoxygenNote": "7.2.3",
"Language": "en-US",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Packaged": "2023-03-17 18:02:44 UTC; jeroen",
"Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),\nJohn MacFarlane [cph] (Author of cmark)",
"Maintainer": "Jeroen Ooms <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2023-03-17 18:40:02 UTC",
"Built": "R 4.3.0; x86_64-pc-linux-gnu; 2023-04-21 21:46:32 UTC; unix"
}
},
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"Source": "CRAN",
"Repository": "https://packagemanager.rstudio.com/all/latest",
"description": {
"Package": "cpp11",
"Title": "A C++11 Interface for R's C Interface",
"Version": "0.4.6",
"Authors@R": "c(\nperson(\"Davis\", \"Vaughan\", email = \"[email protected]\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")),\nperson(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")),\nperson(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")),\nperson(\"Benjamin\", \"Kietzman\", role = \"ctb\"),\nperson(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"))\n)",
"Description": "Provides a header only, C++11 interface to R's C\ninterface. Compared to other approaches 'cpp11' strives to be safe\nagainst long jumps from the C API as well as C++ exceptions, conform\nto normal R function semantics and supports interaction with 'ALTREP'\nvectors.",
"License": "MIT + file LICENSE",
"URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11",
"BugReports": "https://github.com/r-lib/cpp11/issues",
"Depends": "R (>= 3.5.0)",
"Suggests": "bench, brio, callr, cli, covr, decor, desc, ggplot2, glue,\nknitr, lobstr, mockery, progress, rmarkdown, scales, Rcpp,\ntestthat, tibble, utils, vctrs, withr",
"VignetteBuilder": "knitr",
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble,\nvctrs",
"Encoding": "UTF-8",
"RoxygenNote": "7.2.3",
"NeedsCompilation": "no",
"Packaged": "2023-08-08 21:27:43 UTC; davis",
"Author": "Davis Vaughan [aut, cre] (<https://orcid.org/0000-0003-4777-038X>),\nJim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),\nRomain François [aut] (<https://orcid.org/0000-0002-2444-4226>),\nBenjamin Kietzman [ctb],\nPosit Software, PBC [cph, fnd]",
"Maintainer": "Davis Vaughan <[email protected]>",
"Repository": "RSPM",
"Date/Publication": "2023-08-10 06:50:07 UTC",