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We have RHEL 9 on our servers, which automatically updated singularity-ce to 4.1.5 from 4.1.4. The problems started with the 4.1.5.
We have a workflow where development is done inside the sandboxes that were built from the .sif image files. Everything is fine in the sif file, but when a sandbox is created, %environment is dropped.
I also tested Ubuntu 24.04 (wsl), the latest Apptainer, and also singularityCE 4.2.1 (I think).
In 4.1.4, the sandboxes inherited the %environment from the image file, but in 4.1.5, this is not happening. I checked the changelogs, but I don't understand the singularity well enough to know if they can have the effect I described.
Any help would be appreciated. I can provide you with the simplest example to reproduce this.
There is an option to go back to 4.1.4 always
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