From c67de7fd7f8d71236a05b047f642f363ac8d379f Mon Sep 17 00:00:00 2001 From: Guus Wilmink Date: Thu, 19 Sep 2024 10:46:54 +0200 Subject: [PATCH] update inst --- inst/config/config-sample.yml | 6 +++--- inst/extdata/countoccurrences/.gitignore | 3 ++- inst/extdata/standardness/.gitignore | 2 ++ 3 files changed, 7 insertions(+), 4 deletions(-) create mode 100644 inst/extdata/standardness/.gitignore diff --git a/inst/config/config-sample.yml b/inst/config/config-sample.yml index ef83c3d..dd61f00 100644 --- a/inst/config/config-sample.yml +++ b/inst/config/config-sample.yml @@ -7,9 +7,9 @@ # Default values are necessary for the `config` CRAN library, not used in package otherwise # No need to change these values default: - concepts_path: 'inst/extdata/phems_variables_by_table' # required for isStandard() function; specifies path to concept list directory with sourceCode and concept_id - save_path_isStandard: 'inst/extdata/phems_variables_by_table/is_standard' # (optional) if saving standard concept check results. Point to existing directory. - save_path_json: 'inst/extdata/json' # (optional) if saving cohort and/or concept set as json). Point to existing directory + concepts_path: './inst/extdata/phems_variables/' # required for isStandard() function; specifies path to concept list directory with sourceCode and concept_id + save_path_isStandard: './inst/extdata/standardness' # (optional) if saving standard concept check results. Point to existing directory. + save_path_json: './inst/extdata/json' # (optional) if saving cohort and/or concept set as json). Point to existing directory save_path_counts: './inst/extdata/countoccurrences' # where to save results from countOccurrences() ## Paths for CSVs of concepts and saves diff --git a/inst/extdata/countoccurrences/.gitignore b/inst/extdata/countoccurrences/.gitignore index 4cd53b6..444668a 100644 --- a/inst/extdata/countoccurrences/.gitignore +++ b/inst/extdata/countoccurrences/.gitignore @@ -1 +1,2 @@ -count_occurrences.csv \ No newline at end of file +!.gitignore +* \ No newline at end of file diff --git a/inst/extdata/standardness/.gitignore b/inst/extdata/standardness/.gitignore new file mode 100644 index 0000000..a3a0c8b --- /dev/null +++ b/inst/extdata/standardness/.gitignore @@ -0,0 +1,2 @@ +* +!.gitignore \ No newline at end of file