diff --git a/core/src/main/scripts/importer/validateData.py b/core/src/main/scripts/importer/validateData.py index 28d2d07b429..4eba88a2bf9 100755 --- a/core/src/main/scripts/importer/validateData.py +++ b/core/src/main/scripts/importer/validateData.py @@ -4456,12 +4456,17 @@ def __init__(self, *args, **kwargs): def parseFeatureColumns(self, nonsample_col_vals): """Check the IDs in the first column.""" + + allowed_characters = r'[^A-Za-z0-9_.-]' + value = nonsample_col_vals[0].strip() - if ' ' in value: - self.logger.error('Do not use space in the stable id', + + # Check if genetic entity is present and contains allowed characters + if re.search(allowed_characters, value) is not None: + self.logger.error('Feature id contains one or more illegal characters', extra={'line_number': self.line_number, - 'column_number': 1, - 'cause': nonsample_col_vals[0]}) + 'cause': 'id was`' + value + '` and only alpha-numeric, _, . and - are allowed.'}) + return value def checkId(self):