-
Notifications
You must be signed in to change notification settings - Fork 6
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Tumorcode Installation #23
Comments
Dear LiorEps, |
Thank you for the fast response. |
please have a look at |
Thank you for all your help. |
Hi |
Hello, i successfully rebuild and installed the code, but when i executed it with python2 i got the following errors: base) lepstein@lepstein:/usr/include/tumorcode/bin$ sudo python2 submitVesselgeneration Can you please advise? Thank you. |
Hi,
seems strange to me: Does this help? |
Hello,
I've been trying to install Tumorcode on Ubuntu 18. I get the following error during installation:
$ cmake -DCMAKE_INSTALL_PREFIX=/usr/lib/tumorcode /home/user/tumorcode/
-- Boost version: 1.65.1
no numpy cpp!!!
-- Configuring done
-- Generating done
-- Build files have been written to: /home/lepstein/tumorcode/externalProjects/HDF5-cpp-wrapper
[ 11%] Performing update step for 'HDF5-cpp-wrapper'
Current branch master is up to date.
[ 22%] Performing configure step for 'HDF5-cpp-wrapper'
[ 33%] No build step for 'HDF5-cpp-wrapper'
[ 44%] No install step for 'HDF5-cpp-wrapper'
[ 55%] No test step for 'HDF5-cpp-wrapper'
[ 66%] Completed 'HDF5-cpp-wrapper'
[100%] Built target HDF5-cpp-wrapper
CMAKE_ROOT: /usr/share/cmake-3.10
CMAKE_MODULE_PATH:
CMAKE_MODULE_PATH: /home/lepstein/tumorcode/cmake/modules/;
CMAKE_EXE_LINKER_FLAGS: -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/lepstein/anaconda3/envs/py2/lib -Wl,-rpath-link,/home/lepstein/anaconda3/envs/py2/lib -L/home/lepstein/anaconda3/envs/py2/lib
USE_PAGMO preprocessor defined
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- program_options
Boost_PROGRAM_OPTIONS_LIBRARY: /home/lepstein/anaconda3/envs/py2/lib/libboost_program_options.so
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- system
Boost_SYSTEM_LIBRARY: /home/lepstein/anaconda3/envs/py2/lib/libboost_system.so
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- serialization
Boost_SERIALIZATION_LIBRARY: /home/lepstein/anaconda3/envs/py2/lib/libboost_serialization.so
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- thread
-- chrono
-- system
-- date_time
-- atomic
Boost_THREAD_LIBRARY: /home/lepstein/anaconda3/envs/py2/lib/libboost_thread.so
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- filesystem
-- system
Boost_FILESYSTEM_LIBRARY: /home/lepstein/anaconda3/envs/py2/lib/libboost_filesystem.so
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- numpy
-- python
-- HDF5: Using hdf5 compiler wrapper to determine CXX configuration
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- A library with BLAS API found.
CMake Error at /usr/share/cmake-3.10/Modules/FindPackageHandleStandardArgs.cmake:137 (message):
Could NOT find PNG (missing: PNG_LIBRARY) (found version "1.6.34")
Call Stack (most recent call first):
/usr/share/cmake-3.10/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE)
/usr/share/cmake-3.10/Modules/FindPNG.cmake:144 (find_package_handle_standard_args)
CMakeLists.txt:203 (find_package)
-- Configuring incomplete, errors occurred!
See also "/home/lepstein/tumorcode/CMakeFiles/CMakeOutput.log".
See also "/home/lepstein/tumorcode/CMakeFiles/CMakeError.log".
What could be the issue?
Thank you
The text was updated successfully, but these errors were encountered: