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I am trying to run genomic_converter from VCF file to STRUCTURE format, but get a strange error that the default parameter of a radiator_parameter` function is not acceptable.
Here is the full run (including testing VCF file with detect_genomic_format and strata file with read_strata.
> library(radiator)
> radiator::detect_genomic_format(data = "test.vcf")
[1] "vcf.file"
> strata = radiator::read_strata("strata_breed_3_far.tsv")
> res = genomic_converter(data = 'test.vcf', strata = "strata_breed_3_far.tsv", output = c("structure"))
################################################################################
######################### radiator::genomic_converter ##########################
################################################################################
Execution date@time: 20240623@0240
Folder created: 08_radiator_genomic_converter_20240623@0240
Function call and arguments stored in: [email protected]
Filters parameters file generated: [email protected]
v Reading VCF [1s]
i Importing data: vcf.file
Cleaning VCF
LOCUS field empty... adding unique id instead
Filtering markers based on VCF FILTER column
Error in `radiator_parameters()`:
! parameter.obj = NULL not accepted
Run `rlang::last_trace()` to see where the error occurred.
Computation time, overall: 5 sec
Computation time, overall: 5 sec
######################### completed genomic_converter ##########################
x Importing data: vcf.file [5.3s]
Here is the test data that I use with here. test.tar.gz
Any ideas what can be done with it?
Thank you very much in advance.
The text was updated successfully, but these errors were encountered:
I am trying to run
genomic_converter
from VCF file to STRUCTURE format, but get a strange error that the default parameter of a radiator_parameter` function is not acceptable.Here is the full run (including testing VCF file with
detect_genomic_format
and strata file withread_strata
.Here is the test data that I use with here.
test.tar.gz
Any ideas what can be done with it?
Thank you very much in advance.
The text was updated successfully, but these errors were encountered: