From 98d89217c47e56dcb17bb1135200e14d5073469e Mon Sep 17 00:00:00 2001
From: Will Cornwell <w.cornwell@unsw.edu.au>
Date: Wed, 31 Jul 2024 17:13:33 +1000
Subject: [PATCH] reverting previous commit to documentation

---
 R/align_taxa.R    | 7 +++++--
 man/align_taxa.Rd | 7 +++++--
 2 files changed, 10 insertions(+), 4 deletions(-)

diff --git a/R/align_taxa.R b/R/align_taxa.R
index 037bec58..f1d83b4e 100644
--- a/R/align_taxa.R
+++ b/R/align_taxa.R
@@ -156,8 +156,10 @@
 #' @examples
 #' \donttest{
 #' 
+#' resources <- load_taxonomic_resources()
+#' 
 #' # example 1
-#' align_taxa(c("Poa annua", "Abies alba"))
+#' align_taxa(c("Poa annua", "Abies alba"), resources=resources)
 #' 
 #' # example 2
 #' input <- c("Banksia serrata", "Banksia serrate", "Banksia cerrata", 
@@ -167,7 +169,8 @@
 #'   APCalign::align_taxa(
 #'     original_name = input,
 #'     identifier = "APCalign test",
-#'     full = TRUE
+#'     full = TRUE,
+#'     resources=resources
 #'   ) 
 #'   
 #' }
diff --git a/man/align_taxa.Rd b/man/align_taxa.Rd
index 528d4264..f5be6086 100644
--- a/man/align_taxa.Rd
+++ b/man/align_taxa.Rd
@@ -189,8 +189,10 @@ sp. [Royal NP]".
 \examples{
 \donttest{
 
+resources <- load_taxonomic_resources()
+
 # example 1
-align_taxa(c("Poa annua", "Abies alba"))
+align_taxa(c("Poa annua", "Abies alba"), resources=resources)
 
 # example 2
 input <- c("Banksia serrata", "Banksia serrate", "Banksia cerrata", 
@@ -200,7 +202,8 @@ aligned_taxa <-
   APCalign::align_taxa(
     original_name = input,
     identifier = "APCalign test",
-    full = TRUE
+    full = TRUE,
+    resources=resources
   ) 
   
 }