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muse.py needs os.symlink change #1

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Jeltje opened this issue Dec 8, 2015 · 0 comments
Open

muse.py needs os.symlink change #1

Jeltje opened this issue Dec 8, 2015 · 0 comments

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@Jeltje
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Jeltje commented Dec 8, 2015

in muse.py, line 139:
os.symlink(args.D,new_dbsnp)
should be
os.symlink(os.path.abspath(args.D),new_dbsnp)

Otherwise the -D input (dbsnp.vcf) must contain a full path, which is confusing (since the bam files do not need this)
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@Jeltje