From 69c74588bbe63d2a6520f377b0e192cf55f5eb6d Mon Sep 17 00:00:00 2001
From: alexPatrie <alexanderpatrie@gmail.com>
Date: Fri, 1 Dec 2023 14:23:53 -0500
Subject: [PATCH] adjusted config_schema to include emission types

---
 process_bigraph/emitter.py                      | 5 ++++-
 process_bigraph/experiments/smoldyn_database.py | 5 ++++-
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/process_bigraph/emitter.py b/process_bigraph/emitter.py
index 98e1660..3ef55b5 100644
--- a/process_bigraph/emitter.py
+++ b/process_bigraph/emitter.py
@@ -161,7 +161,10 @@ class MongoDatabaseEmitter(DatabaseEmitter):
     default_host = 'localhost:27017'
     client_dict: Dict[int, MongoClient] = {}
     config_schema = {
-        'ports': 'tree[any]'}
+        'ports': 'tree[any]',
+        'emit_limit': 'int',
+        'embed_path': 'tuple[str]'
+    }
 
     @classmethod
     def create_indexes(cls, table: Any, columns: List[Any]) -> None:
diff --git a/process_bigraph/experiments/smoldyn_database.py b/process_bigraph/experiments/smoldyn_database.py
index 4ced5d7..7ccf982 100644
--- a/process_bigraph/experiments/smoldyn_database.py
+++ b/process_bigraph/experiments/smoldyn_database.py
@@ -36,7 +36,10 @@ def run_smoldyn_simulation():
     time_output = simulation.getOutputData('time')
     mol_output = simulation.getOutputData('molecules')
 
-    
+    # create an empty instance of database emitter
+    emitter = MongoDatabaseEmitter(config={})
+
+