CHANGELOG.md

0.6.1 (November 2019)

• Remove tornado

0.6.0 (November 2019)

• Install Fiji
• Install ilastik version 1.3.2post1
• Install Orbit
• Add notebook for Fiji, ilastik and Orbit

0.5.1 (October 2019)

• Add Makefile

0.5.0 (October 2019)

• Install beakerX
• Update CellProfiler version to 3.1.8
• Update OMERO version to 5.5.0
• Update rGateway version to 0.4.7
• Add Python notebook to run a simple frap algorithm

0.4.1 (February 2019)

• Run CellProfiler notebook on 5 wells only

0.4.0 (November 2018)

• Change base image version
• Update rGateway to 0.4.3
• Add R notebook to segment images from idr0021

0.3.0 (August 2018)

• Review installation of R and CellProfiler
• Allow to run OMERO using CLI
• Adjust idr0021 notebook to match changes in the analysis workflow
• Ask user to enter credentials

0.2.0 (June 2018)

• Add support for CellProfiler version 3.1.3
• Add notebook using one plane from idr0002

0.1.0 (May 2018)

First release for the annual users meeting.