diff --git a/README.md b/README.md index d87ded3..f5987a8 100755 --- a/README.md +++ b/README.md @@ -1,4 +1,3 @@ - # kallisto task for RNA-seq This task provides a convenience wrapper around [kallisto](https://pachterlab.github.io/kallisto/). It can compute gene quantifications from reads in FASTQ format or build a kallisto index from transcript sequences in FASTA format. @@ -40,6 +39,7 @@ This will produce an output directory containing quantifications (`output.abunda |output|path to output file; if it exists, it will be overwritten|(required)| |kmer-size|the kmer size to use|31| |make-unique|if set, sequences with duplicate names are made unique|false| + **Quantification**: |name|description|default| |--|--|--|