forked from samirdas/samirdas.github.io
-
Notifications
You must be signed in to change notification settings - Fork 0
/
BIC_lecture.html
executable file
·650 lines (577 loc) · 27.4 KB
/
BIC_lecture.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>LORIS - A Database System</title>
<!-- The important Javascript libraries -->
<link rel="stylesheet" href="css/reveal.css">
<link rel="stylesheet" href="css/theme/black.css" id="theme">
<!-- Code syntax highlighting -->
<link rel="stylesheet" href="lib/css/zenburn.css">
<!-- Printing and PDF exports -->
<script>
var link = document.createElement( 'link' );
link.rel = 'stylesheet';
link.type = 'text/css';
link.href = window.location.search.match( /print-pdf/gi ) ? 'css/print/pdf.css' : 'css/print/paper.css';
document.getElementsByTagName( 'head' )[0].appendChild( link );
</script>
<!--[if lt IE 9]>
<script src="lib/js/html5shiv.js"></script>
<![endif]-->
</head>
<body>
<div class="reveal">
<!-- Any section element inside of this container is displayed as a slide -->
<div class="slides">
<section>
<section>
<h2>BIC Infrastructure Software</h2>
<h4> LORIS, CBRAIN, and More...</h4>
<table class="reveal">
<tr>
<td width="50%" style="vertical-align: middle">
<p><font color='yellow'> Dr. William Feindel<br> Lecture Series</font></p>
<p><small>March 30, 2015<br>
Samir Das - Software Manager</small></p>
</td>
<td>
<img src="images/Feindel.png">
</td></tr></table>
</section>
<section>
<img src="images/12_years.png">
</section>
<section>
<img src="images/Bald_samir.jpg">
</section>
</section>
<section id="fragments">
<h2><font color="blue">From Acquisition to Analysis</font></h2>
<p>
<span class="fragment">Data acquisition, </span>
<span class="fragment">Transfer, </span>
<span class="fragment">Anonymization, </span>
<span class="fragment">Security and Privacy, </span>
<span class="fragment">Validation, </span>
<span class="fragment">Preprocessing, </span>
<span class="fragment">Storage, </span>
<span class="fragment">Data management, </span>
<span class="fragment">Quality control, </span>
<span class="fragment">Data sharing, </span>
<span class="fragment">Download, </span>
<span class="fragment">Image processing, </span>
<span class="fragment">Statistical analysis </span>
<span class="fragment">...and Paper writing! </span>
</p>
<p><b><font color="blue"><span class="fragment">LORIS </span></font>
<font color="green"><span class="fragment">CBRAIN </span></font></b>
<font color="yellow"><span class="fragment">and more... </span></font>
</p>
<!--Notes-->
<aside class="notes">
</aside>
</section>
<section>
<h2>Data flow</h2>
<img src="images/MNI_ecosystem.png">
</section>
<section>
<section>
<h2>BIC Imaging Database</h2>
<img src="images/BIC_imaging_DB.png">
</section>
<section>
<h2>BIC Clinical Database</h2>
<img src="images/Tara.jpg">
</section>
</section>
<section>
<section>
<h2>What is LORIS?</h2>
<table class="reveal">
<tr>
<td width="50%" style="vertical-align: middle">
<img src="images/LORIS_logo.png">
<p><small> “LORIS is a modular and extensible web-based data management system that integrates all aspects of a multi-center study: from heterogeneous data acquisition (imaging, clinical, behavior, genetics) to storage, processing and ultimately dissemination.”</small></p>
</td>
<td>
<img src="images/LORIS_paper.png">
</td></tr></table>
</section>
<section>
<h2>What does LORIS do?</h2>
<img src="images/LORIS_functionality.png">
</section>
<section data-background="images/LORIS_full_functionality.png">
<h1><font color="blue">What does LORIS actually do?</font></h1>
</section>
<section>
<h2>What can LORIS do for the BIC?</h2>
<img src="images/LORIS_BIC.png">
</section>
</section>
<section>
<section data-background="images/LORIS_global.png">
<h1><font color ="blue">LORIS globally</font></h1>
</section>
<section>
<img src="images/NIHPD_logo.jpg">
<table class="reveal">
<tr>
<td width="45%" style="vertical-align: middle">
<img src="images/NIHPD_paper.png">
</td>
<td width="30%" style="vertical-align: middle">
<img src="images/MRI_images_several.jpg">
</td>
<td width="30%" style="vertical-align: middle">
<p><small>
<ul>
<li>8 year study</li>
<li>Longitudinal data</li>
<li>532 subjects</li>
<li>8000 distinct variables</li>
<li>37000 individual assessments</li>
<li>T1, T2, PD, DTI</li>
<li>Spectroscopy</li>
<li>∼3TB of imaging data</li>
<li>2000 MRI acquisitions</li>
</ul>
</small></p>
</td>
</tr></table>
</section>
<section>
<img src="images/IBIS.png">
<table class="reveal">
<tr>
<td width="45%" style="vertical-align: middle">
<img src="images/IBIS_paper.png">
</td>
<td width="30%" style="vertical-align: middle">
<img src="images/IBIS_image.png">
</td>
<td width="30%" style="vertical-align: middle">
<p><small>
<ul>
<li>Infant brain development in autism</li>
<li>3000+ scans</li>
<li>700+ subjects</li>
<li>7000 distinct variables</li>
<li>150,000+ individual assessments</li>
<li>T1, T2, DTI, BOLD</li>
<li>∼5 TBs of imaging data</li>
<li>Genetic/biospecimen data</li>
</ul>
</small></p>
</td>
</tr></table>
</section>
<section>
<table class="reveal">
<h2>BigBrain</h2>
<tr>
<td width="50%" style="vertical-align: middle">
<img src="images/BigBrain.png">
</td>
<td width="50%" style="vertical-align: middle">
<img src="images/BigBrain_paper.png">
</td>
</tr></table>
</section>
<!--
<section>
<iframe width="560" height="315" src="https://www.youtube.com/embed/nJpFvQ0YZLk" frameborder="0" allowfullscreen></iframe>
</section>
-->
<section data-background-video="images/Bigbrain_low.mp4" data-background-color="#000000">
<p class="fragment current-visible"><font size="9" color="blue">BigBrain - high resolution reference brain</font></p>
<p class="fragment current-visible"><font size="9" color="blue">Multimodal integration into an anatomically realistic standard space</font></p>
<p class="fragment current-visible"><font size="9" color="blue">Years of development</font></p>
<p class="fragment current-visible"><font size="9" color="blue">20 micron resolution</font></p>
<p class="fragment current-visible"><font size="9" color="blue">7404 histological slices</font></p>
<p class="fragment current-visible"><font size="9" color="blue">1 Terabyte dataset</font></p>
<p class="fragment current-visible"><font size="9" color="blue">Available freely at https://bigbrain.loris.ca</font></p>
</section>
</section>
<!-- LORIS core -->
<section>
<section>
<h2>Login</h2>
<a href="https://demo.loris.ca" target="_blank"><img src="images/LORIS_login.png"></a>
</section>
<section>
<h2>Dashboard</h2>
<img src="images/Dashboard.png">
</section>
<section>
<h2>Summary Statistics</h2>
<img src="images/Statistics_behavioural.png">
</section>
<section>
<h2>Permissions/User control</h2>
<img src="images/Permissions.png">
</section>
<section>
<h2>List of subjects</h2>
<img src="images/Subject_list.png">
</section>
<section>
<h2>Timepoints</h2>
<img src="images/Timepoint_list.png">
</section>
<section>
<h2>Battery of Measures</h2>
<p><small><font color="yellow">For list of 400+ instruments: https://sites.google.com/site/lorisinstrumentlist</font></small>
<img src="images/Battery.png">
</p>
</section>
<section>
<h2>Psychometric Subject Summary</h2>
<img src="images/AOSI.png">
</section>
<section>
<h2>Psychometric Data Entry</h2>
<img src="images/Psychometric2.png">
</section>
<section>
<h2>Survey Module</h2>
<img src="images/Survey_module.png">
</section>
</section>
<!-- Statistics
<section>
<section>
<h2>General Statistics</h2>
<img src="images/Statistics_general.png">
</section>
<section>
<h2>Imaging Statistics</h2>
<img src="images/Statistics_imaging.png">
</section>
</section>
-->
<!-- Imaging Browser -->
<section>
<section>
<h2>Imaging Browser</h2>
<img src="images/Imaging_menu.png">
</section>
<section>
<h2>Imaging Quality Control</h2>
<img src="images/Imaging_scans.png">
</section>
<section>
<h2>Visualization - <font color="yellow">BrainBrowser</font></h2>
<img src="images/BrainBrowser_VolumeViewer.png">
</section>
<section>
<h3>BrainBrowser - <font color ="green"> 3D Surface Viewer </font></h3>
<p><a href="https://brainbrowser.cbrain.mcgill.ca/surface-viewer#ct" target="_blank"><img src="images/BrainBrowser_SurfaceViewer.png"></a></p>
</section>
<section>
<h2><font color ="red">Protocol Violations</font></h2>
<img src="images/Violated_scans.png">
</section>
<section>
<table class="reveal">
<h2>Radiological Review Module</h2>
<tr>
<td width="61%" style="vertical-align: middle">
<img src="images/Radiological_review_menu.png">
</td>
<td width="39%" style="vertical-align: middle">
<img src="images/Radiological_review_form.png">
</td>
</tr></table>
</section>
<section>
<h2>DICOM archives</h2>
<img src="images/DICOM_archive.png">
</section>
<section>
<h2>Imaging Uploader -<font color="red"> New</font></h2>
<img src="images/Imaging_uploader.png">
</section>
</section>
<!-- Data Querying Tool -->
<section>
<section>
<h2>Data Dictionary Builder</h2>
<img src="images/Data_dictionary.png">
</section>
<section>
<h2>Data Querying Tool</h2>
<img src="images/DQT_Define.png">
</section>
<section>
<h2>Data Querying Tool - <font color="yellow"> Results</font></h2>
<img src="images/DQT_Results.png">
</section>
<section>
<h2>Data Querying Tool - <font color="yellow">Statistics</font></h2>
<img src="images/DQT_Stats.png">
</section>
</section>
<section>
<section>
<h2>Mobile <font color="yellow"> - Responsive layout</font></h2>
<img src="images/Mobile_responsive.png">
</section>
<section>
<h2>Mobile <font color="yellow"> - Data entry</font></h2>
<img src="images/Mobile_data_entry.png">
</section>
<section>
<h2>Mobile <font color="yellow"> - Imaging</font></h2>
<img src="images/Mobile_imaging.png">
</section>
</section>
<section>
<section>
<h2>LORIS - Github <font color="yellow"> - Open Source</font></h2>
<img src="images/LORIS_Github.png">
</section>
<section>
<h2>LORIS - <font color="yellow">Requirements</font></h2>
<p class="fragment grow">Dedicated developer! (software is free of charge)</p>
<p class="fragment roll-in">LINUX based server</p>
<p class="fragment roll-in">LAMP stack</p>
<p class="fragment roll-in">Perl and other peripheral libraries (i.e DCMTK)</p>
<p class="fragment roll-in">Beer for Samir</p>
</section>
<section>
<h2>LORIS - <font color="blue"> Links</font></h2>
<p>Website: <a href="http:www.loris.ca" target="_blank"> www.loris.ca</a></p>
<p>Demo: <a href="https://demo.loris.ca" target="_blank"> https://demo.loris.ca</a></p>
<p>LORIS developers mailing list: <a href="mailto:[email protected]"> [email protected]</a></p>
<p>Source code: <a href="https://github.com/aces/Loris" target="_blank"> https://github.com/aces/Loris</a></p>
</section>
</section>
<!-- CBRAIN -->
<section>
<section>
<table class="reveal">
<h2>CBRAIN</h2>
<tr>
<td width="50%" style="vertical-align: middle">
<p><small><font color="yellow"> Web-based</font></small></p>
<p><small><font color="yellow"> Collaborative research platform</font></small></p>
<p><small><font color="yellow"> Access to remote sources</font></small></p>
<p><small><font color="yellow"> Distributed high performance computing</font></small></p>
<p><small><font color="yellow"> Processing and visualization tools</font></small></p>
<p><small><font color="yellow"> Secure, controlled environment</font></small></p>
</td>
<td width="50%" style="vertical-align: middle">
<img src="images/CBRAIN_paper.png">
</td>
</tr></table>
</section>
<section>
<h2>CBRAIN - Functionality</h2>
<p class="fragment roll-in">Non-expert users can easily leverage Compute Canada</p>
<p class="fragment roll-in">Anyone can request an account (best effort support):<br> <a href="mailto:[email protected]">[email protected]</a> </p>
<p class="fragment roll-in">CBRAIN code is now public: <a href="https://github.com/aces/cbrain" target="blank">https://github.com/aces/cbrain</a> </p>
<p class="fragment roll-in">Includes several structural and functional MRI tools</p>
<p class="fragment roll-in">Continued integration of new tools as per community needs</p>
</section>
<section>
<h2>CBRAIN - Tools</h2>
<p align="left"><font color="yellow"> Conversion tools:</font></p>
<p align="left">MINC ↔ NIfTI, DICOM → MINC, DICOM → NIfTI, Analyze → HRRT, ASPIRO → MINC, DICOM → HRRT, MINC1 ↔ MINC2</p>
<p align="left"align="left"><font color="yellow">Image Processing tools:</font>
<ul>
<li> Civet, CivetCombiner & CivetQC</li>
<li> FSL: bedpostx, bet, fast, feat, first flirt, melodic, probtrackx</li>
<li> FreeSurfer: recon-all, and recon-all longitudinal</li>
<li> NIAK</li>
<li> Several other project specific tools</li>
</ul>
</section>
<!-- CIVET: Corticometric Iterative Vertex-based Estimations of Topology -->
<section>
<table class="reveal">
<h2>CIVET</h2>
<tr>
<td width="50%" style="vertical-align: middle">
<p><small>The CIVET project was initiated in order to create an automated, easy-to-use human brain-imaging pipeline that makes use of state-of-the-art software tools developed by researchers at the BIC for the fully-automated processing and analysis of large MR data sets, including the extraction and analysis of cortical surfaces from MR images, as well as many other volumetric and corticometric functions.</small></p>
<img src="images/CIVET.png">
</td>
<td width="50%" style="vertical-align: top">
<p class="fragment roll-in"><font color="blue">Fully automated anatomical pipeline</font></p>
<p class="fragment roll-in"><font color="blue">Parallel processing</p>
<p class="fragment roll-in"><font color="blue">Can handle large datasets</p>
<p class="fragment roll-in"><font color="blue">Includes QC mechanisms</p>
<p class="fragment roll-in"><font color="blue">>10 yrs active development</p>
<p class="fragment roll-in"><font color="blue">Publication in process</p>
</td>
</tr></table>
</section>
<section>
<table class="reveal">
<h2>CIVET - Processing steps</h2>
<tr>
<td>
<img src="images/CIVET_processing_steps.png">
</td>
</tr></table>
</section>
<section>
<table class="reveal">
<h2>CIVET - Pipeline schema</h2>
<tr>
<td>
<img src="images/CIVET_steps.png">
</td>
<td style="vertical-align: top">
<img src="images/CIVET_surface.png">
<img src="images/CIVET_segmentation.png">
</td>
</tr></table>
</section>
<section>
<h2>fMRI Pipeline - <font color ="red"> NIAK</font></h2>
<table class="reveal">
<tr>
<td width="78%" style="vertical-align: middle">
<img src="images/NIAK.jpg">
</td>
<td width="22%" style="vertical-align: middle">
<img src="images/Bellec.png">
<p class="fragment roll-in">My name is Pierre Bellec...</p>
<p class="fragment roll-in">... and I love fruit!</p>
</td>
</tr></table>
</section>
<section>
<h2>CBRAIN portal</h2>
<img src="images/CBRAIN_portal.png">
</section>
<section>
<h2>CBRAIN projects</h2>
<img src="images/CBRAIN_mainpage.png">
</section>
<section>
<h2>CBRAIN tasks</h2>
<img src="images/CBRAIN_tasks.png">
</section>
<section>
<img src="images/CBRAIN_schema.png">
</section>
<section>
<img src="images/CBRAIN_distribution.png">
</section>
<section>
<img src="images/CBRAIN_hours.png">
</section>
</section>
<!-- MINC -->
<section>
<section>
<table class="reveal">
<h2>MINC</h2>
<tr>
<td width="60%" style="vertical-align: middle">
<img src="images/MINC.png">
</td>
<td width="40%" style="vertical-align: middle">
<p><small>The MINC file format and toolbox was originally conceived, written and released by Peter Neelin in 1992.</small></p>
</td>
</tr></table>
</section>
<section>
<h2>Install MINC - BIC systems</h2>
<p class="fragment roll-in">By default binaries are available at <font color="green"> /usr/local/mni </font></p>
<p class="fragment roll-in">Better to use <font color="green"> /usr/local/bic</font></p>
<p class="fragment roll-in">A much more up-to-date version is installed in <font color="green"> /ipl/quarantine/std/x86_64/1.0 </font></p>
<p class="fragment roll-in">To execute: <font color="green"> source /ipl/quarantine/std/x86_64/1.0/init.csh</font></p>
</section>
<section>
<h2>Install MINC - Personal computers</h2>
<p class="fragment roll-in">For personal computers (incl. Macs): <a href ="https://www.mcgill.ca/bic/resources/minc/minctoolkit">https://www.mcgill.ca/bic/resources/minc/minctoolkit</a> </p>
<p class="fragment roll-in">Two versions are mentioned: 1.0 and 1.9.2: install 1.0 version, which includes all the standard MINC tools with support for MINC2.</p>
<p class="fragment roll-in">Main difference: ITK-based software is also included. </p>
<!--
<p class="fragment roll-in">Version 1.0 uses ITK 3.20 and contains mincANTS + some of Vlad's tools that use ITK 1.9.xx contains ITK 4.7 and includes ANTS, Elastix and ABC - but most people don’t need that. </p>
-->
</section>
<section>
<h2>MINC resources</h2>
<ul><small>
<li>minc-users mailing list: <br> <a href="http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users">http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users</a></li> <br>
<li>Current documention on wikibooks: <br> <a href="http://en.wikibooks.org/wiki/MINC">http://en.wikibooks.org/wiki/MINC</a></li> <br>
<li>Current combined release: <br><a href="http://www.bic.mni.mcgill.ca/ServicesSoftware/ServicesSoftwareMincToolKit">http://www.bic.mni.mcgill.ca/ServicesSoftware/ServicesSoftwareMincToolKit</a></li> <br>
<li>Github (for bug report and source code) <br><a href="https://github.com/BIC-MNI/minc-toolkit/">https://github.com/BIC-MNI/minc-toolkit/</a></li> <br>
</small></ul>
</section>
</section>
<section data-transition="slide" data-background="#87CEEB" data-background-transition="zoom">
<img src="images/Royal_vic.png">
<h4>Acknowledgments</h4>
<p><small><font color="black">Alan Evans, Alex Zijdenbos, Reza Adalat, Penelope Kostopoulos, Louis Collins, Vladimir Fonov, Marc Rousseau, Tarek Sherif, Pierre Rioux, Nic Kassis, Leigh MacIntyre, Claude Lepage, Ilana Leppert, Carolina Makowski, Natasha Beck, Tristan Glatard, Bert Vincent, Lindsay Lewis, Guiomar Niso, Elodie Portales-Casamar, Jeremy Moreau, Athena Buckthought, Alden Woodward, Reuka Giles, Kelvin Mok, Sylvain Milot, Jean Francois Malouin & Sylvain Baillet</font></small></p>
<p><small> <font color="white">LORIS Developers: </font><font color="black"> Dario Vins, Jonathan Harlap, Matt Charlet, Andrew Corderey, Sebastien Muehlboeck, David Brownlee, Zia Mohaddes, David MacFarlane, Cecile Madjar, Mia Petkova, Christine Rogers, Rathi Gnanasekeran, Justin Kat, Nicolas Brossard, Tara Campbell, Jordan Stirling, Daniel Kroetz, Ted Strauss, Young-vin Nah, Shipra Agarwal, Pierre-Emmaunel, Martin Weiss, Ayan Sengupta, Olga Tsibulevskaya, Nicolas St. George, Justin Leong, Mathieu Desrosiers & Tom Beaudry </font></small> </p>
</section>
</section>
<!--
<section>
<section id="fragments">
<h2>Fragments</h2>
<p>Hit the next arrow...</p>
<p class="fragment">... to step through ...</p>
<p><span class="fragment">... a</span> <span class="fragment">fragmented</span> <span class="fragment">slide.</span></p>
<aside class="notes">
This slide has fragments which are also stepped through in the notes window.
</aside>
</section>
<section>
<h2>Fragment Styles</h2>
<p>There's different types of fragments, like:</p>
<p class="fragment grow">grow</p>
<p class="fragment shrink">shrink</p>
<p class="fragment roll-in">roll-in</p>
<p class="fragment fade-out">fade-out</p>
<p class="fragment current-visible">current-visible</p>
<p class="fragment highlight-red">highlight-red</p>
<p class="fragment highlight-blue">highlight-blue</p>
</section>
</section>
<section id="transitions">
<h2>Transition Styles</h2>
<p>
You can select from different transitions, like: <br>
<a href="?transition=none#/transitions">None</a> -
<a href="?transition=fade#/transitions">Fade</a> -
<a href="?transition=slide#/transitions">Slide</a> -
<a href="?transition=convex#/transitions">Convex</a> -
<a href="?transition=concave#/transitions">Concave</a> -
<a href="?transition=zoom#/transitions">Zoom</a>
</p>
</section>
-->
</div>
</div>
<script src="lib/js/head.min.js"></script>
<script src="js/reveal.js"></script>
<script>
// Full list of configuration options available at:
// https://github.com/hakimel/reveal.js#configuration
Reveal.initialize({
controls: true,
progress: true,
history: true,
center: true,
transition: 'slide', // none/fade/slide/convex/concave/zoom
// Optional reveal.js plugins
dependencies: [
{ src: 'lib/js/classList.js', condition: function() { return !document.body.classList; } },
{ src: 'plugin/markdown/marked.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } },
{ src: 'plugin/markdown/markdown.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } },
{ src: 'plugin/highlight/highlight.js', async: true, condition: function() { return !!document.querySelector( 'pre code' ); }, callback: function() { hljs.initHighlightingOnLoad(); } },
{ src: 'plugin/zoom-js/zoom.js', async: true },
{ src: 'plugin/notes/notes.js', async: true }
]
});
</script>
</body>
</html>