forked from DataBiosphere/toil
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Makefile
143 lines (103 loc) · 4.31 KB
/
Makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
# Copyright (C) 2015 UCSC Computational Genomics Lab
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
define help
Supported targets: prepare, develop, docs, sdist, clean, test, pypi.
Please note that all build targets require a virtualenv to be active.
The 'prepare' target installs Toil's build requirements into the current virtualenv.
The 'develop' target creates an editable install of Toil and its runtime requirements in the
current virtualenv. The install is called 'editable' because changes to the source code
immediately affect the virtualenv. Set the 'extras' variable to ensure that the 'develop' target
installs support for extras. Consult setup.py for the list of supported extras. To install Toil
in develop mode with all extras, run
make develop extras=[mesos,aws,google,azure,cwl,encryption]
The 'sdist' target creates a source distribution of Toil suitable for hot-deployment (not
implemented yet).
The 'clean' target undoes the effect of 'develop', 'docs', and 'sdist'.
The 'docs' target uses Sphinx to create HTML documentation in the docs/_build directory
The 'test' target runs Toil's unit tests. Set the 'tests' variable to run a particular test, e.g.
make test tests=src/toil/test/sort/sortTest.py::SortTest::testSort
The 'pypi' target publishes the current commit of Toil to PyPI after enforcing that the working
copy and the index are clean, and tagging it as an unstable .dev build.
endef
export help
help:
@echo "$$help"
python=python2.7
pip=pip2.7
tests=src
extras=
green=\033[0;32m
normal=\033[0m
red=\033[0;31m
develop: check_venv
$(pip) install -e .$(extras)
clean_develop: check_venv
- $(pip) uninstall -y toil
- rm -rf src/*.egg-info
sdist: check_venv
$(python) setup.py sdist
clean_sdist:
- rm -rf dist
test: check_venv check_build_reqs sdist
$(python) run_tests.py $(tests)
pypi: check_venv check_clean_working_copy check_running_on_jenkins
set -x \
&& tag_build=`$(python) -c 'pass;\
from version import version as v;\
from pkg_resources import parse_version as pv;\
import os;\
print "--tag-build=.dev" + os.getenv("BUILD_NUMBER") if pv(v).is_prerelease else ""'` \
&& $(python) setup.py egg_info $$tag_build sdist bdist_egg upload
clean_pypi:
- rm -rf build/
docs: check_venv check_build_reqs
# Strange, but seemingly benign Sphinx warning floods stderr if not filtered:
cd docs && make html 2>&1 | grep -v "WARNING: duplicate object description of"
clean_docs: check_venv
- cd docs && make clean
clean: clean_develop clean_sdist clean_pypi clean_docs
check_build_reqs:
@$(python) -c 'import mock; import pytest' \
|| ( echo "$(red)Build requirements are missing. Run 'make prepare' to install them.$(normal)" ; false )
prepare: check_venv
$(pip) install sphinx==1.4.1 mock==1.0.1 pytest==2.8.3
check_venv:
@$(python) -c 'import sys; sys.exit( int( not hasattr(sys, "real_prefix") ) )' \
|| ( echo "$(red)A virtualenv must be active.$(normal)" ; false )
check_clean_working_copy:
@echo "$(green)Checking if your working copy is clean ...$(normal)"
@git diff --exit-code > /dev/null \
|| ( echo "$(red)Your working copy looks dirty.$(normal)" ; false )
@git diff --cached --exit-code > /dev/null \
|| ( echo "$(red)Your index looks dirty.$(normal)" ; false )
@test -z "$$(git ls-files --other --exclude-standard --directory)" \
|| ( echo "$(red)You have are untracked files:$(normal)" \
; git ls-files --other --exclude-standard --directory \
; false )
check_running_on_jenkins:
@echo "$(green)Checking if running on Jenkins ...$(normal)"
@test -n "$$BUILD_NUMBER" \
|| ( echo "$(red)This target should only be invoked on Jenkins.$(normal)" ; false )
.PHONY: help \
prepare \
develop clean_develop \
sdist clean_sdist \
test \
pypi clean_pypi \
docs clean_docs \
clean \
check_venv \
check_clean_working_copy \
check_running_on_jenkins \
check_build_reqs