Output cleaned fasta files to output folder instead of input folder #102
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Hi Kiarash!
Since 1.0.8, there are additional checks/rewrites for .fasta files (
write_fasta_only_aaandwrite_fasta_no_gaps). Both of those checks output the reformatted file next to the input file. I propose the reformatted files are written to the output folder instead.While this is a very minor change, that would really help in our use case, where we enforce that inputs and input folders are always read-only. Thanks!