Reconfigure to use Ruff for linting and formatting

[forrestfwilliams]

This PR swaps calling the reusable flake8 workflow for the new reusable ruff workflow. Also adds new ruff configuration options to the pyproject.toml.

Still deciding whether or not to reformat the entire repository within this PR.

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
/home/runner/micromamba/envs/hyp3-isce2/lib/python3.11/site-packages/hyp3_isce2
__main__.py	26	2	92%	33, 44
burst.py	170	51	70%	78–81, 94–99, 113–128, 144–153, 167–177, 235, 282–290, 310–324
dem.py	53	3	94%	101–110
insar_stripmap.py	69	42	39%	39–92, 96–98, 115–134
insar_tops.py	50	28	44%	42–75, 96–116
insar_tops_burst.py	201	159	21%	72–146, 158–184, 212–290, 302–384, 424–504
logging.py	4	1	75%	9
s1_auxcal.py	21	2	90%	51, 59
slc.py	34	10	71%	22–25, 29–34
stripmapapp_alos.py	50	7	86%	103, 139, 142–147
topsapp.py	69	8	88%	76, 106, 128–134
utils.py	77	30	61%	102–104, 117–125, 137–142, 187–200, 210–214, 226–227
/home/runner/micromamba/envs/hyp3-isce2/lib/python3.11/site-packages/hyp3_isce2/metadata
util.py	14	9	36%	6–14, 18–21, 25–27
TOTAL	901	352	61%

Tests	Skipped	Failures	Errors	Time
42	0 💤	0 ❌	0 🔥	30.276s ⏱️

[forrestfwilliams]

Trufflehog is failing because of a commit hash in a comment linking to a MintPy PR. Safe to ignore.