04-21-6 and progenies missing data #78
Workflow file for this run
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| name: Yeast genealogy preview | |
| # Branch genealogy-preview must exist for this action to work. | |
| on: | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| workflow_dispatch: | |
| jobs: | |
| build_plots_and_publish: | |
| if: "! github.event.pull_request.head.repo.fork " # If pull request is Not from Fork | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| COMMIT_SHA: ${{ github.event.pull_request.head.sha }} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v2 | |
| - name: Install Rust toolchain | |
| uses: dtolnay/rust-toolchain@stable | |
| - name: Install Graphviz | |
| run: sudo apt-get install -y graphviz | |
| - name: Wait for other instances to complete | |
| uses: softprops/turnstyle@v1 | |
| with: | |
| poll-interval-seconds: 10 | |
| - name: Generate, Commit and Push genealogy plot | |
| run: | | |
| git config user.name "github-actions[bot]" | |
| git config user.email "github-actions[bot]@users.noreply.github.com" | |
| git fetch | |
| cargo run --verbose | |
| cat genealogy.dot | dot -Tpng > genealogy.png | |
| cp genealogy.png ../genealogy.png | |
| git restore . | |
| git switch genealogy-preview | |
| cp ../genealogy.png genealogy-${COMMIT_SHA}.png | |
| git add genealogy-${COMMIT_SHA}.png | |
| git commit --allow-empty -m "Yeast genealogy preview action" | |
| git push origin HEAD:genealogy-preview | |
| - name: Publish genealogy plot | |
| run: | | |
| IMAGE_URL="https://raw.githubusercontent.com/${{ github.repository }}/genealogy-preview/genealogy-${COMMIT_SHA}.png" | |
| COMMIT_URL="https://github.com/${{ github.repository }}/commit/${COMMIT_SHA}" | |
| COMMENT="Building using data from commit [${COMMIT_SHA}](${COMMIT_URL})\nGenerated image: [${IMAGE_URL}](${IMAGE_URL})\n" | |
| COMMENT_URL=$(jq -r .pull_request.comments_url "$GITHUB_EVENT_PATH") | |
| curl -H "Authorization: token $GITHUB_TOKEN" -H "Content-Type: application/json" -X POST --data "{\"body\": \"$COMMENT\"}" "$COMMENT_URL" |