test: updated secrets, run #41
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| name: github pages | |
| on: | |
| push: | |
| branches: | |
| # - main # Set a branch to deploy | |
| - develop # Note has logic around deployment | |
| #schedule: | |
| # - cron: 0 13 * * 1 # At 13:00 on Monday | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-22.04 | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| steps: | |
| - uses: actions/[email protected] | |
| with: | |
| submodules: true # Fetch Hugo themes (true OR recursive) | |
| fetch-depth: 0 # Fetch all history for .GitInfo and .Lastmod | |
| - name: Install curl | |
| run: sudo apt update && sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.2.0' | |
| - name: Setup renv | |
| uses: r-lib/actions/setup-renv@v2 | |
| with: | |
| cache-version: 2 | |
| # - name: Run scripts | |
| # run: | | |
| # Rscript scripts/add_badges.R | |
| # Rscript scripts/add_contributions.R | |
| # env: | |
| # GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Run visualisations | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| run: | | |
| Rscript scripts/add_hexwall_network.R | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Setup Hugo | |
| uses: peaceiris/actions-hugo@v2 | |
| with: | |
| hugo-version: '0.85.0' | |
| extended: true | |
| # IF main | |
| - name: Build | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| run: hugo --minify | |
| - name: Deploy | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./public | |
| # IF develop | |
| - name: Build | |
| if: ${{ github.ref == 'refs/heads/develop' }} | |
| run: hugo -e staging | |
| - name: Deploy to Posit Connect | |
| if: ${{ github.ref == 'refs/heads/develop' }} | |
| env: | |
| CONNECT_SERVER: ${{ secrets.POSIT_CONNECT_SERVER }} | |
| CONNECT_API_KEY: ${{ secrets.POSIT_CONNECT_API_KEY }} | |
| DEPLOYMENT_NAME: "pharmaverse-staging" | |
| run: | | |
| Rscript -e ' | |
| print(list.files("public")); | |
| print(Sys.getenv("CONNECT_SERVER")); | |
| print(Sys.getenv("DEPLOYMENT_NAME")); | |
| rsconnect::addServer(url = Sys.getenv("CONNECT_SERVER"), name = Sys.getenv("DEPLOYMENT_NAME")); | |
| rsconnect::connectApiUser(apiKey = Sys.getenv("CONNECT_API_KEY"), server = Sys.getenv("DEPLOYMENT_NAME")); | |
| rsconnect::deployApp( | |
| appDir = "./public", | |
| appName = Sys.getenv("DEPLOYMENT_NAME"), | |
| server = Sys.getenv("DEPLOYMENT_NAME") | |
| ); | |
| ' |