Add cleavage peptide prediction via NLPPrecursor and DeepPeptide #38

Sign in to view logs

Summary
Jobs
- lint
Run details
- Usage
- Workflow file

Triggered via pull request February 15, 2024 15:37

synchronize #3

ter/cleavage

Status Failure

Total duration 20s

Billable time 1m

Artifacts –

lint.yml

on: pull_request

Annotations

9 errors and 1 warning

Ruff (F841): scripts/run_nlpprecursor.py#L64

scripts/run_nlpprecursor.py:64:9: F841 Local variable `class_predictions` is assigned to but never used

Ruff (F841): scripts/run_nlpprecursor.py#L69

scripts/run_nlpprecursor.py:69:5: F841 Local variable `cleavage_predictions` is assigned to but never used

Ruff (F821): scripts/run_nlpprecursor.py#L73

scripts/run_nlpprecursor.py:73:11: F821 Undefined name `output_tsv`

Ruff (F821): scripts/run_nlpprecursor.py#L74

scripts/run_nlpprecursor.py:74:14: F821 Undefined name `csv`

Ruff (E501): scripts/run_nlpprecursor.py#L77

scripts/run_nlpprecursor.py:77:101: E501 Line too long (112 > 100)

Ruff (F821): scripts/run_nlpprecursor.py#L80

scripts/run_nlpprecursor.py:80:36: F821 Undefined name `sequences`

Ruff (F821): scripts/run_nlpprecursor.py#L82

scripts/run_nlpprecursor.py:82:22: F821 Undefined name `class_predictions`

Ruff (F821): scripts/run_nlpprecursor.py#L83

scripts/run_nlpprecursor.py:83:25: F821 Undefined name `cleavage_predictions`

Process completed with exit code 1.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v4. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.