Skip to content
nf-core CI

Merge Template update for nf-core/tools version 2.11.1 #140

Sign in to view logs

Merge Template update for nf-core/tools version 2.11.1

Merge Template update for nf-core/tools version 2.11.1 #140

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Run pipeline with test data (23.04.0)
21m 5s
Run pipeline with test data (23.04.0)
21m 5s
Run pipeline with test data (23.04.0)
21m 5s
Run pipeline with test data (23.04.0)
21m 5s
Test workflow parameters (--consensus_caller ivar)
20m 27s
Test workflow parameters (--consensus_caller ivar)
20m 27s
Test workflow parameters (--consensus_caller ivar)
20m 27s
Test workflow parameters (--consensus_caller ivar)
20m 27s
Run pipeline with test data (latest-everything)
20m 54s
Run pipeline with test data (latest-everything)
20m 54s
Run pipeline with test data (latest-everything)
20m 54s
Run pipeline with test data (latest-everything)
20m 54s
Test Nanopore workflow (--gff false)
3m 9s
Test Nanopore workflow (--gff false)
5m 48s
Test Nanopore workflow (--gff false)
5m 48s
Test Nanopore workflow (--gff false)
5m 48s
Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)
19m 58s
Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)
19m 58s
Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)
19m 58s
Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)
19m 58s
Test Nanopore workflow (--input false)
3m 9s
Test Nanopore workflow (--input false)
3m 9s
Test Nanopore workflow (--input false)
1s
Test Nanopore workflow (--input false)
1s
Test workflow parameters (--skip_fastp --skip_pangolin)
21m 0s
Test workflow parameters (--skip_fastp --skip_pangolin)
21m 0s
Test workflow parameters (--skip_fastp --skip_pangolin)
21m 0s
Test workflow parameters (--skip_fastp --skip_pangolin)
21m 0s
Test Nanopore workflow (--min_barcode_reads 10000)
1m 40s
Test Nanopore workflow (--min_barcode_reads 10000)
1m 40s
Test Nanopore workflow (--min_barcode_reads 10000)
1m 40s
Test Nanopore workflow (--min_barcode_reads 10000)
1m 40s
Test workflow parameters (--skip_variants)
7m 17s
Test workflow parameters (--skip_variants)
7m 17s
Test workflow parameters (--skip_variants)
7m 17s
Test workflow parameters (--skip_variants)
7m 17s
Test SISPA workflow (--gff false)
12m 34s
Test SISPA workflow (--gff false)
12m 34s
Test SISPA workflow (--gff false)
12m 34s
Test SISPA workflow (--gff false)
12m 34s
Test Nanopore workflow (--min_guppyplex_reads 10000)
3m 8s
Test Nanopore workflow (--min_guppyplex_reads 10000)
3m 8s
Test Nanopore workflow (--min_guppyplex_reads 10000)
3m 8s
Test Nanopore workflow (--min_guppyplex_reads 10000)
3m 8s
Test workflow parameters (--skip_cutadapt --skip_snpeff)
20m 15s
Test workflow parameters (--skip_cutadapt --skip_snpeff)
20m 15s
Test workflow parameters (--skip_cutadapt --skip_snpeff)
20m 15s
Test workflow parameters (--skip_cutadapt --skip_snpeff)
20m 15s
Test SISPA workflow (--genome 'NC_045512.2')
13m 49s
Test SISPA workflow (--genome 'NC_045512.2')
13m 49s
Test SISPA workflow (--genome 'NC_045512.2')
13m 49s
Test SISPA workflow (--genome 'NC_045512.2')
13m 49s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false)
3m 9s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false)
3m 9s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false)
3m 9s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false)
3m 9s
Test workflow parameters (--skip_kraken2)
20m 13s
Test workflow parameters (--skip_kraken2)
20m 13s
Test workflow parameters (--skip_kraken2)
20m 13s
Test workflow parameters (--skip_kraken2)
20m 13s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
2m 52s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
2m 52s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
2m 52s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
2m 52s
Test workflow parameters (--skip_assembly)
16m 3s
Test workflow parameters (--skip_assembly)
16m 3s
Test workflow parameters (--skip_assembly)
16m 3s
Test workflow parameters (--skip_assembly)
16m 3s
Test workflow parameters (--spades_mode corona)
20m 12s
Test workflow parameters (--spades_mode corona)
20m 12s
Test workflow parameters (--spades_mode corona)
20m 12s
Test workflow parameters (--spades_mode corona)
20m 12s
Test workflow parameters (--spades_mode metaviral)
20m 3s
Test workflow parameters (--spades_mode metaviral)
20m 3s
Test workflow parameters (--spades_mode metaviral)
20m 3s
Test workflow parameters (--spades_mode metaviral)
20m 3s
Test workflow parameters (--skip_plasmidid false --skip_asciigenome)
22m 57s
Test workflow parameters (--skip_plasmidid false --skip_asciigenome)
22m 57s
Test workflow parameters (--skip_plasmidid false --skip_asciigenome)
22m 57s
Test workflow parameters (--skip_plasmidid false --skip_asciigenome)
22m 57s
18h 17m 17s